Variant report

Variant	rs60099931
Chromosome Location	chr9:93197475-93197476
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56754390	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56891727	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56976986	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57630733	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58174490	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58344378	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58966490	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60697894	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72742978	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742980	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742990	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72742995	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744716	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72744720	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv614853	chr9:93183404-93266508	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93195200-93199200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:93195800-93204000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:93196200-93220800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:93196400-93198000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr9:93196400-93198000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
6	chr9:93196400-93198600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:93196400-93199000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr9:93196400-93199200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:93196400-93199400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr9:93196600-93197800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
11	chr9:93196600-93199000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr9:93197000-93197600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr9:93197000-93197800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr9:93197400-93198400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:93197400-93198400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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