Variant report

Variant	rs41281934
Chromosome Location	chr9:100136371-100136372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100135058..100137231-chr9:100142276..100144723,2	MCF-7	breast:
2	chr9:100125915..100128768-chr9:100134081..100137040,2	MCF-7	breast:
3	chr9:100135703..100138230-chr9:100150823..100152336,2	K562	blood:
4	chr9:100127178..100130349-chr9:100134319..100136599,3	K562	blood:
5	chr9:100136304..100137136-chr9:100161582..100162137,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TDRD7-1	chr9:100132923-100136930	NONHSAT133501

No data

Variant related genes	Relation type
ENSG00000221269	Chromatin interaction
ENSG00000197816	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs41281916	1.00[AMR][1000 genomes]
rs41281922	1.00[AMR][1000 genomes]
rs41281928	1.00[AMR][1000 genomes]
rs6478124	1.00[AMR][1000 genomes]
rs7029224	1.00[AMR][1000 genomes]
rs7848156	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7855979	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036105	chr9:100131266-100171816	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100077000-100140800	Weak transcription	Fetal Brain Male	brain
2	chr9:100091600-100149200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:100104400-100142000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr9:100106800-100143200	Weak transcription	Liver	Liver
5	chr9:100107200-100138400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:100108000-100148200	Weak transcription	Esophagus	oesophagus
7	chr9:100115400-100144600	Weak transcription	Hela-S3	cervix
8	chr9:100115600-100139200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr9:100117400-100145000	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:100117600-100146400	Weak transcription	Small Intestine	intestine
11	chr9:100118200-100141600	Weak transcription	Primary T cells from cord blood	blood
12	chr9:100120000-100137800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr9:100121800-100137800	Weak transcription	Gastric	stomach
14	chr9:100126400-100137800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr9:100126600-100141600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:100126600-100148400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr9:100127000-100148600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr9:100129000-100137200	Weak transcription	Aorta	Aorta
19	chr9:100129000-100137800	Weak transcription	Pancreas	Pancrea
20	chr9:100129000-100138200	Weak transcription	Brain Substantia Nigra	brain
21	chr9:100129000-100144400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr9:100129200-100137200	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr9:100129200-100137600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:100129600-100138600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:100132000-100140000	Strong transcription	Brain Inferior Temporal Lobe	brain
26	chr9:100132000-100142600	Weak transcription	Fetal Kidney	kidney
27	chr9:100132000-100149000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:100132200-100137400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr9:100132200-100140200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr9:100132200-100141000	Strong transcription	Stomach Smooth Muscle	stomach
31	chr9:100132200-100141400	Strong transcription	Fetal Muscle Trunk	muscle
32	chr9:100132400-100138400	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr9:100132400-100140000	Strong transcription	Right Ventricle	heart
34	chr9:100132400-100140600	Weak transcription	Fetal Heart	heart
35	chr9:100132400-100141000	Strong transcription	Adipose Nuclei	Adipose
36	chr9:100132400-100146800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr9:100132600-100139400	Strong transcription	Fetal Muscle Leg	muscle
38	chr9:100132600-100144400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:100132600-100146800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr9:100132600-100148600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr9:100132600-100149400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr9:100132600-100149400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:100132800-100138200	Weak transcription	Fetal Brain Female	brain
44	chr9:100132800-100139400	Weak transcription	Primary B cells from cord blood	blood
45	chr9:100132800-100141200	Strong transcription	Fetal Stomach	stomach
46	chr9:100133000-100138600	Weak transcription	Brain Germinal Matrix	brain
47	chr9:100133000-100141000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr9:100133200-100139200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr9:100133400-100137800	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr9:100133400-100140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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