Variant report

Variant	rs41287888
Chromosome Location	chr1:70588869-70588870
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:70584345..70586135-chr1:70587754..70589321,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10493472	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11799572	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11810684	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11810719	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11810721	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17131204	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17131207	0.81[AMR][1000 genomes]
rs17131208	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17131209	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17131214	0.81[AMR][1000 genomes]
rs17131215	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17131218	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17131219	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17131220	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17131223	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17357463	0.86[AMR][1000 genomes]
rs2220958	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28537484	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3767209	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3767210	0.86[AMR][1000 genomes]
rs3767211	0.86[AMR][1000 genomes]
rs4650027	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4650028	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs487613	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55634563	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55782523	0.86[AMR][1000 genomes]
rs55970826	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55992448	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56013720	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56108385	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56194840	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56200611	0.86[AMR][1000 genomes]
rs57977150	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61784310	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61784313	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61784315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61784317	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61784318	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61784319	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61784320	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61785271	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61785280	0.81[AMR][1000 genomes]
rs6678316	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6696040	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs74085938	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74085939	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7518536	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521532	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9970462	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9970998	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531879	chr1:70386455-70644617	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:70557000-70599600	Weak transcription	Fetal Brain Female	brain
2	chr1:70583800-70599600	Weak transcription	Fetal Heart	heart
3	chr1:70588400-70599000	Weak transcription	Brain Germinal Matrix	brain

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