Variant report

Variant	rs41292768
Chromosome Location	chr13:51508967-51508968
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51504617..51506922-chr13:51508240..51511207,2	K562	blood:
2	chr13:51483508..51485914-chr13:51506913..51509596,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLEU7-5	chr13:51508740-51509355	l_847_chr13:51508739-51522354_testes

Variant related genes	Relation type
ENSG00000233672	Chromatin interaction
ENSG00000136104	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34164728	0.81[AFR][1000 genomes]
rs57199709	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61333791	0.95[AFR][1000 genomes]
rs61962174	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61962189	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61962192	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61962202	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9568490	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51486600-51528400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
3	chr13:51496600-51529800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51496800-51510600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:51496800-51533200	Weak transcription	NH-A	brain
6	chr13:51499000-51509000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr13:51499600-51511800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:51501200-51509000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr13:51501800-51525000	Weak transcription	Brain Substantia Nigra	brain
10	chr13:51502400-51511800	Weak transcription	Colonic Mucosa	Colon
11	chr13:51502400-51530800	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr13:51502400-51531200	Weak transcription	NHLF	lung
13	chr13:51502600-51509200	Weak transcription	Gastric	stomach
14	chr13:51502600-51511600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr13:51502800-51509000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr13:51503000-51531600	Strong transcription	Primary B cells from peripheral blood	blood
17	chr13:51503000-51538200	Weak transcription	HMEC	breast
18	chr13:51503200-51509000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr13:51503200-51509200	Weak transcription	NHEK	skin
20	chr13:51503200-51513200	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr13:51503200-51520800	Weak transcription	HSMMtube	muscle
22	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
23	chr13:51503400-51509200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr13:51503400-51510000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr13:51503400-51510200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr13:51503400-51511600	Strong transcription	Primary T cells from cord blood	blood
27	chr13:51503400-51512600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr13:51503400-51513000	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr13:51503400-51514000	Strong transcription	Thymus	Thymus
30	chr13:51503400-51528200	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr13:51503400-51531600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr13:51503600-51510200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr13:51503600-51510400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr13:51503600-51512800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr13:51503600-51513200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr13:51503600-51528400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr13:51503600-51551800	Strong transcription	Dnd41	blood
38	chr13:51503800-51509200	Strong transcription	Primary hematopoietic stem cells	blood
39	chr13:51503800-51509400	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr13:51503800-51509600	Strong transcription	Primary B cells from cord blood	blood
41	chr13:51503800-51510000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr13:51503800-51518600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr13:51504400-51510400	Strong transcription	Duodenum Mucosa	Duodenum
44	chr13:51504400-51513200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
45	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
46	chr13:51504600-51509000	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr13:51504600-51511000	Strong transcription	GM12878-XiMat	blood
48	chr13:51504800-51509600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr13:51505000-51509000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr13:51505200-51509000	Weak transcription	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links