Variant report

Variant	rs61962202
Chromosome Location	chr13:51539698-51539699
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:51186188..51187899-chr13:51538381..51540074,2	K562	blood:

rs_ID	r²[population]
rs34164728	0.81[AFR][1000 genomes]
rs41292768	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs57199709	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61333791	0.95[AFR][1000 genomes]
rs61962174	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61962189	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61962192	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs9568490	0.84[AFR][1000 genomes]

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51491600-51551000	Weak transcription	Small Intestine	intestine
2	chr13:51503200-51549400	Weak transcription	Psoas Muscle	Psoas
3	chr13:51503600-51551800	Strong transcription	Dnd41	blood
4	chr13:51504400-51551800	Strong transcription	Fetal Thymus	thymus
5	chr13:51509400-51541400	Weak transcription	A549	lung
6	chr13:51509600-51542400	Weak transcription	NHEK	skin
7	chr13:51509800-51543200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr13:51509800-51550200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr13:51510000-51545400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr13:51510200-51543800	Weak transcription	Pancreas	Pancrea
11	chr13:51510200-51545000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr13:51510200-51546200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:51512000-51546200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr13:51512400-51543800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr13:51512800-51542400	Weak transcription	Fetal Brain Male	brain
16	chr13:51513000-51543800	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr13:51513000-51552200	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr13:51513200-51540600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr13:51513200-51546800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr13:51516400-51548800	Weak transcription	Gastric	stomach
21	chr13:51517200-51543800	Weak transcription	Spleen	Spleen
22	chr13:51518000-51550400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr13:51518000-51551200	Weak transcription	Placenta	Placenta
24	chr13:51518200-51543800	Weak transcription	Lung	lung
25	chr13:51518600-51552000	Weak transcription	Fetal Brain Female	brain
26	chr13:51518800-51549000	Weak transcription	Fetal Intestine Small	intestine
27	chr13:51521400-51549000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr13:51523600-51555200	Weak transcription	HSMMtube	muscle
29	chr13:51523800-51546000	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr13:51523800-51550600	Weak transcription	HSMM	muscle
31	chr13:51524600-51548400	Weak transcription	NHDF-Ad	bronchial
32	chr13:51524600-51550400	Weak transcription	Rectal Smooth Muscle	rectum
33	chr13:51524800-51552200	Weak transcription	Colonic Mucosa	Colon
34	chr13:51525400-51547400	Weak transcription	Osteobl	bone
35	chr13:51525600-51543800	Weak transcription	Fetal Stomach	stomach
36	chr13:51525800-51547400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr13:51526200-51540200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr13:51526200-51544600	Weak transcription	Colon Smooth Muscle	Colon
39	chr13:51526200-51549000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr13:51526200-51550000	Weak transcription	Primary neutrophils fromperipheralblood	blood
41	chr13:51527600-51543800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr13:51527600-51545000	Weak transcription	Hela-S3	cervix
43	chr13:51530200-51541000	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr13:51530400-51540400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr13:51530400-51540600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
46	chr13:51530400-51541800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr13:51530400-51546200	Weak transcription	Brain Substantia Nigra	brain
48	chr13:51530600-51563400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:51532200-51542200	Weak transcription	Brain Germinal Matrix	brain
50	chr13:51532600-51545400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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