Variant report

Variant	rs61962189
Chromosome Location	chr13:51472638-51472639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs34164728	0.81[AFR][1000 genomes]
rs41292768	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs57199709	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61333791	0.95[AFR][1000 genomes]
rs61962174	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61962192	0.92[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs61962202	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9568490	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900078	chr13:51454896-51478716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51465600-51474600	Weak transcription	Aorta	Aorta
2	chr13:51469000-51483400	Weak transcription	Fetal Lung	lung
3	chr13:51471600-51474600	Weak transcription	Fetal Thymus	thymus
4	chr13:51471800-51472800	Enhancers	Primary B cells from cord blood	blood
5	chr13:51471800-51474400	Enhancers	GM12878-XiMat	blood
6	chr13:51472000-51473000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr13:51472000-51473400	Enhancers	Fetal Heart	heart
8	chr13:51472000-51478200	Weak transcription	Thymus	Thymus
9	chr13:51472200-51472800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr13:51472200-51472800	Enhancers	Primary B cells from peripheral blood	blood
11	chr13:51472200-51472800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr13:51472200-51472800	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr13:51472400-51472800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr13:51472400-51474600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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