Variant report

Variant	rs41308645
Chromosome Location	chr10:97446635-97446636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97445324..97446895-chr10:97453311..97455435,2	K562	blood:
2	chr10:97438903..97441882-chr10:97445653..97448127,2	K562	blood:
3	chr10:97444739..97447666-chr10:97448568..97450155,2	MCF-7	breast:
4	chr10:97442460..97444341-chr10:97446324..97448349,2	MCF-7	breast:
5	chr10:97444989..97451306-chr10:97451745..97454944,9	MCF-7	breast:
6	chr10:97445568..97447567-chr10:97448579..97450884,3	K562	blood:

Variant related genes	Relation type
ENSG00000119977	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11188389	1.00[EUR][1000 genomes]
rs12263982	1.00[EUR][1000 genomes]
rs41302725	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7081293	1.00[EUR][1000 genomes]
rs7900149	1.00[EUR][1000 genomes]
rs7915910	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97423000-97452000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:97424000-97448200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr10:97427800-97452600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:97431800-97446800	Weak transcription	Fetal Heart	heart
5	chr10:97431800-97450600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr10:97431800-97451200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:97432000-97450800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:97432800-97452000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:97433000-97451800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:97433400-97447600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:97433400-97447600	Strong transcription	Adipose Nuclei	Adipose
12	chr10:97433400-97451400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:97433800-97452600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:97434000-97452000	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:97434200-97452000	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr10:97434400-97450600	Strong transcription	Dnd41	blood
17	chr10:97434400-97451000	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr10:97434400-97451600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:97434400-97452200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:97434600-97450400	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr10:97434600-97450800	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:97434600-97451000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr10:97434600-97451600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr10:97434800-97446800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr10:97434800-97451800	Strong transcription	HUES6 Cell Line	embryonic stem cell
26	chr10:97434800-97451800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:97435000-97451200	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr10:97435000-97452000	Strong transcription	Placenta	Placenta
29	chr10:97435600-97451000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:97435600-97451600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr10:97435800-97447600	Strong transcription	Fetal Thymus	thymus
32	chr10:97435800-97449200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr10:97436000-97449400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:97436200-97452000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr10:97436200-97452200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
36	chr10:97436400-97451800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr10:97436600-97450200	Strong transcription	Primary T helper cells PMA-I stimulated	--
38	chr10:97437000-97448600	Strong transcription	Fetal Intestine Large	intestine
39	chr10:97437200-97447600	Strong transcription	Liver	Liver
40	chr10:97437200-97451400	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr10:97437200-97451800	Strong transcription	Primary T cells from cord blood	blood
42	chr10:97437200-97452400	Strong transcription	Ovary	ovary
43	chr10:97437400-97447400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr10:97437400-97447400	Strong transcription	Left Ventricle	heart
45	chr10:97437400-97447600	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr10:97437400-97448400	Strong transcription	GM12878-XiMat	blood
47	chr10:97437400-97450600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr10:97437400-97451600	Strong transcription	Duodenum Mucosa	Duodenum
49	chr10:97437400-97451800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:97437400-97452000	Strong transcription	Fetal Muscle Trunk	muscle

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