Variant report

Variant	rs12263982
Chromosome Location	chr10:97359844-97359845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10882623	1.00[ASN][1000 genomes]
rs10882624	1.00[ASN][1000 genomes]
rs10882625	1.00[ASN][1000 genomes]
rs10882626	1.00[ASN][1000 genomes]
rs10882627	1.00[ASN][1000 genomes]
rs10882628	1.00[ASN][1000 genomes]
rs10882629	1.00[ASN][1000 genomes]
rs10882630	0.97[ASN][1000 genomes]
rs10882631	1.00[ASN][1000 genomes]
rs10882632	1.00[ASN][1000 genomes]
rs10882633	0.97[ASN][1000 genomes]
rs10882634	0.97[ASN][1000 genomes]
rs10882635	0.97[ASN][1000 genomes]
rs10882636	1.00[ASN][1000 genomes]
rs11188366	1.00[ASN][1000 genomes]
rs11188367	1.00[ASN][1000 genomes]
rs11188368	1.00[ASN][1000 genomes]
rs11188369	1.00[ASN][1000 genomes]
rs11188370	1.00[ASN][1000 genomes]
rs11188371	1.00[ASN][1000 genomes]
rs11188376	1.00[ASN][1000 genomes]
rs11188389	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12218873	0.97[ASN][1000 genomes]
rs12242866	1.00[ASN][1000 genomes]
rs12242918	1.00[ASN][1000 genomes]
rs12242923	1.00[ASN][1000 genomes]
rs12248661	1.00[ASN][1000 genomes]
rs12250514	1.00[ASN][1000 genomes]
rs12255572	1.00[ASN][1000 genomes]
rs12257523	1.00[ASN][1000 genomes]
rs12259971	0.92[ASN][1000 genomes]
rs12264173	0.97[ASN][1000 genomes]
rs12267675	0.89[ASN][1000 genomes]
rs12269408	1.00[ASN][1000 genomes]
rs41302725	1.00[EUR][1000 genomes]
rs41308645	1.00[EUR][1000 genomes]
rs6584010	1.00[ASN][1000 genomes]
rs7081293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085365	1.00[ASN][1000 genomes]
rs7086374	0.97[ASN][1000 genomes]
rs7099430	1.00[ASN][1000 genomes]
rs7099515	1.00[ASN][1000 genomes]
rs73325155	1.00[ASN][1000 genomes]
rs73325195	0.97[ASN][1000 genomes]
rs74150947	0.85[ASN][1000 genomes]
rs7896068	1.00[ASN][1000 genomes]
rs7900149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903143	0.91[ASN][1000 genomes]
rs7912555	1.00[ASN][1000 genomes]
rs7914594	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7914886	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7915910	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915912	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97357600-97360400	Weak transcription	HepG2	liver
3	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
4	chr10:97359800-97361000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr10:97359800-97361400	Enhancers	Skeletal Muscle Female	skeletal muscle

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