Variant report

Variant	rs12269408
Chromosome Location	chr10:97332675-97332676
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97320460..97323446-chr10:97332611..97334793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095637	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10882622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10882623	1.00[ASN][1000 genomes]
rs10882624	1.00[ASN][1000 genomes]
rs10882625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs10882627	1.00[ASN][1000 genomes]
rs10882628	1.00[ASN][1000 genomes]
rs10882629	1.00[ASN][1000 genomes]
rs10882630	0.97[ASN][1000 genomes]
rs10882631	1.00[ASN][1000 genomes]
rs10882632	1.00[ASN][1000 genomes]
rs10882633	0.97[ASN][1000 genomes]
rs10882634	0.97[ASN][1000 genomes]
rs10882635	0.97[ASN][1000 genomes]
rs10882636	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188366	1.00[ASN][1000 genomes]
rs11188367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[ASN][1000 genomes]
rs11188368	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11188369	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11188370	1.00[ASN][1000 genomes]
rs11188371	1.00[ASN][1000 genomes]
rs11188376	1.00[ASN][1000 genomes]
rs11188389	1.00[ASN][1000 genomes]
rs12218873	0.97[ASN][1000 genomes]
rs12242866	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12242918	1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs12242923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];1.00[ASN][1000 genomes]
rs12248661	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12250514	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12255572	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12257523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12259971	0.92[ASN][1000 genomes]
rs12263982	1.00[ASN][1000 genomes]
rs12264173	0.97[ASN][1000 genomes]
rs12267675	0.89[ASN][1000 genomes]
rs6584010	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7081293	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7085365	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7086374	0.97[ASN][1000 genomes]
rs7099430	1.00[ASN][1000 genomes]
rs7099515	1.00[ASN][1000 genomes]
rs73325155	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73325195	0.97[ASN][1000 genomes]
rs74150947	0.85[ASN][1000 genomes]
rs7896068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs7896181	1.00[AMR][1000 genomes]
rs7900029	1.00[AMR][1000 genomes]
rs7900149	1.00[ASN][1000 genomes]
rs7903143	0.91[ASN][1000 genomes]
rs7912555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7914594	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7914886	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7915910	0.97[ASN][1000 genomes]
rs7915912	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97332000-97333600	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr10:97332000-97334200	Enhancers	HSMMtube	muscle
3	chr10:97332400-97333200	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:97332400-97333200	Weak transcription	Left Ventricle	heart
5	chr10:97332600-97333000	Weak transcription	Psoas Muscle	Psoas
6	chr10:97332600-97333200	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:97332600-97333400	Weak transcription	Brain Anterior Caudate	brain
8	chr10:97332600-97333400	Weak transcription	Right Ventricle	heart
9	chr10:97332600-97333600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:97332600-97333800	Enhancers	Fetal Lung	lung
11	chr10:97332600-97334200	Weak transcription	Right Atrium	heart
12	chr10:97332600-97334800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:97332600-97335200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:97332600-97335400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:97332600-97335400	Enhancers	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links