Variant report

Variant	rs7896181
Chromosome Location	chr10:97280257-97280258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97271514..97273430-chr10:97278974..97280871,3	K562	blood:
2	chr10:97277519..97280426-chr10:97289369..97291949,2	K562	blood:
3	chr10:97274675..97276217-chr10:97279235..97281158,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10882625	1.00[AMR][1000 genomes]
rs10882636	1.00[AMR][1000 genomes]
rs11188342	0.91[AFR][1000 genomes]
rs12257523	1.00[AMR][1000 genomes]
rs12269408	1.00[AMR][1000 genomes]
rs6584010	1.00[AMR][1000 genomes]
rs7085365	1.00[AMR][1000 genomes]
rs7089353	0.94[AFR][1000 genomes]
rs7900029	1.00[AMR][1000 genomes]
rs7912555	1.00[AMR][1000 genomes]
rs7914594	1.00[AMR][1000 genomes]
rs7914886	1.00[AMR][1000 genomes]
rs7915912	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808679	chr10:97266478-97316855	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97269000-97282600	Weak transcription	Fetal Kidney	kidney
2	chr10:97270600-97283400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:97271000-97281200	Enhancers	Right Ventricle	heart
4	chr10:97271600-97284600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:97273600-97284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr10:97274400-97280400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:97276600-97283400	Enhancers	Fetal Brain Male	brain
8	chr10:97277000-97284200	Enhancers	Fetal Brain Female	brain
9	chr10:97277800-97280800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:97278000-97284000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr10:97278000-97294000	Weak transcription	Esophagus	oesophagus
12	chr10:97278800-97280400	Weak transcription	Fetal Intestine Small	intestine
13	chr10:97278800-97280800	Weak transcription	Brain Hippocampus Middle	brain
14	chr10:97278800-97282000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr10:97279000-97281800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr10:97279000-97282000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr10:97279000-97284000	Weak transcription	Psoas Muscle	Psoas
18	chr10:97279000-97284000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:97279200-97280800	Weak transcription	Left Ventricle	heart
20	chr10:97279200-97280800	Weak transcription	Right Atrium	heart
21	chr10:97279200-97281000	Weak transcription	Gastric	stomach
22	chr10:97279200-97281000	Weak transcription	Ovary	ovary
23	chr10:97279200-97281000	Weak transcription	Stomach Mucosa	stomach
24	chr10:97279200-97281800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:97279200-97281800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr10:97279200-97281800	Weak transcription	Brain Germinal Matrix	brain
27	chr10:97279200-97282600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:97279200-97282600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:97279200-97282800	Weak transcription	HSMMtube	muscle
30	chr10:97279200-97285800	Weak transcription	Pancreas	Pancrea
31	chr10:97279200-97290400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr10:97279200-97290400	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:97279200-97293200	Weak transcription	Fetal Lung	lung
34	chr10:97279400-97282000	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr10:97279400-97282000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr10:97279400-97282200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr10:97279400-97283800	Weak transcription	K562	blood
38	chr10:97279400-97285800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr10:97279600-97281000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr10:97279600-97281800	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr10:97279600-97282200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr10:97279600-97284000	Weak transcription	Liver	Liver
43	chr10:97279600-97284800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:97279800-97280400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:97279800-97280600	Weak transcription	Colon Smooth Muscle	Colon
46	chr10:97279800-97280800	Weak transcription	Brain Anterior Caudate	brain
47	chr10:97279800-97280800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:97279800-97280800	Weak transcription	Fetal Heart	heart
49	chr10:97279800-97281000	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr10:97279800-97281800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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