Variant report

Variant	rs7914594
Chromosome Location	chr10:97354795-97354796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10882622	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs10882623	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882624	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882625	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10882626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882627	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882628	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882629	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882630	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10882631	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882632	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10882633	0.97[ASN][1000 genomes]
rs10882634	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs10882635	0.97[ASN][1000 genomes]
rs10882636	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11188366	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188369	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188370	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188371	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188376	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11188389	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12218873	0.88[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12242866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12242918	1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12242923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12248661	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12250514	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12255572	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12257523	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12259971	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12263982	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12264173	0.97[ASN][1000 genomes]
rs12267675	0.89[ASN][1000 genomes]
rs12269408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6584010	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7081293	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7085365	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7086374	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7099430	0.91[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7099515	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73325155	1.00[ASN][1000 genomes]
rs73325195	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs74150947	0.85[ASN][1000 genomes]
rs7896068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7896181	1.00[AMR][1000 genomes]
rs7900029	1.00[AMR][1000 genomes]
rs7900149	1.00[ASN][1000 genomes]
rs7903143	0.91[ASN][1000 genomes]
rs7912555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7914886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7915910	0.97[ASN][1000 genomes]
rs7915912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv948146	chr10:97350519-97357135	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas

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