Variant report

Variant	rs11188389
Chromosome Location	chr10:97361460-97361461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97189782..97190781-chr10:97360668..97361524,4	MCF-7	breast:
2	chr10:97239375..97239913-chr10:97360587..97361534,2	MCF-7	breast:
3	chr10:97226590..97227155-chr10:97360952..97361496,2	K562	blood:
4	chr10:97134068..97135058-chr10:97360561..97361606,11	K562	blood:
5	chr10:97189856..97190852-chr10:97360581..97361516,9	MCF-7	breast:
6	chr10:97122750..97123330-chr10:97360929..97361471,2	MCF-7	breast:
7	chr10:97189854..97191679-chr10:97360563..97361585,11	K562	blood:
8	chr10:97134082..97135344-chr10:97360078..97361554,17	MCF-7	breast:
9	chr10:97149803..97150837-chr10:97360594..97361494,3	MCF-7	breast:
10	chr10:97205315..97206214-chr10:97360559..97361486,6	MCF-7	breast:
11	chr10:97096077..97097107-chr10:97360732..97361499,3	K562	blood:

No data

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10882622	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.82[YRI][hapmap]
rs10882623	1.00[ASN][1000 genomes]
rs10882624	1.00[ASN][1000 genomes]
rs10882625	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10882626	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs10882627	1.00[ASN][1000 genomes]
rs10882628	1.00[ASN][1000 genomes]
rs10882629	1.00[ASN][1000 genomes]
rs10882630	0.97[ASN][1000 genomes]
rs10882631	1.00[ASN][1000 genomes]
rs10882632	1.00[ASN][1000 genomes]
rs10882633	0.97[ASN][1000 genomes]
rs10882634	0.97[ASN][1000 genomes]
rs10882635	0.97[ASN][1000 genomes]
rs10882636	1.00[ASN][1000 genomes]
rs11188366	1.00[ASN][1000 genomes]
rs11188367	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs11188368	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs11188369	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs11188370	1.00[ASN][1000 genomes]
rs11188371	1.00[ASN][1000 genomes]
rs11188376	1.00[ASN][1000 genomes]
rs12218873	0.97[ASN][1000 genomes]
rs12242866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs12242918	0.91[ASW][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs12242923	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs12248661	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12250514	0.91[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.82[MKK][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs12255572	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12257523	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12259971	0.92[ASN][1000 genomes]
rs12263982	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264173	0.97[ASN][1000 genomes]
rs12267675	0.89[ASN][1000 genomes]
rs12269408	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs41302725	1.00[EUR][1000 genomes]
rs41308645	1.00[EUR][1000 genomes]
rs6584010	1.00[ASN][1000 genomes]
rs7081293	1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7085365	1.00[ASN][1000 genomes]
rs7086374	0.97[ASN][1000 genomes]
rs7099430	1.00[ASN][1000 genomes]
rs7099515	1.00[ASN][1000 genomes]
rs73325155	1.00[ASN][1000 genomes]
rs73325195	0.97[ASN][1000 genomes]
rs74150947	0.85[ASN][1000 genomes]
rs7896068	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];1.00[ASN][1000 genomes]
rs7900149	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7903143	0.91[ASN][1000 genomes]
rs7912555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs7914594	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7914886	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7915910	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7915912	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11188389	ENTPD1	cis	lymphoblastoid	seeQTL

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97359400-97364600	Weak transcription	Placenta	Placenta
3	chr10:97360000-97361600	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr10:97360000-97364000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:97360200-97361600	Enhancers	Rectal Smooth Muscle	rectum
6	chr10:97360200-97364400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:97360200-97364600	Weak transcription	GM12878-XiMat	blood
8	chr10:97360400-97364400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:97360400-97364600	Enhancers	HepG2	liver
10	chr10:97360600-97361600	Enhancers	Fetal Intestine Small	intestine
11	chr10:97360600-97363200	Weak transcription	Right Ventricle	heart
12	chr10:97360600-97364000	Weak transcription	Right Atrium	heart
13	chr10:97360800-97362600	Enhancers	Fetal Intestine Large	intestine
14	chr10:97360800-97364400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:97360800-97364400	Weak transcription	Fetal Brain Female	brain
16	chr10:97360800-97364800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:97360800-97365000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:97360800-97365000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:97360800-97366200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:97361000-97361600	Enhancers	Stomach Smooth Muscle	stomach
21	chr10:97361000-97361800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:97361000-97363800	Weak transcription	Fetal Stomach	stomach
23	chr10:97361000-97364600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:97361000-97364600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:97361000-97364800	Weak transcription	Stomach Mucosa	stomach
26	chr10:97361000-97365000	Weak transcription	Adipose Nuclei	Adipose
27	chr10:97361000-97365000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr10:97361000-97365000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr10:97361000-97365200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr10:97361000-97366000	Weak transcription	Hela-S3	cervix
31	chr10:97361000-97366400	Weak transcription	Brain Cingulate Gyrus	brain
32	chr10:97361000-97366800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:97361000-97367600	Weak transcription	Fetal Kidney	kidney
34	chr10:97361000-97368200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr10:97361000-97368400	Weak transcription	Brain Hippocampus Middle	brain
36	chr10:97361200-97361600	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr10:97361200-97363200	Weak transcription	Fetal Muscle Leg	muscle
38	chr10:97361200-97364200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr10:97361200-97364800	Weak transcription	Brain Anterior Caudate	brain
40	chr10:97361400-97363200	Weak transcription	HSMMtube	muscle
41	chr10:97361400-97363800	Weak transcription	Colon Smooth Muscle	Colon
42	chr10:97361400-97364000	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr10:97361400-97364200	Weak transcription	Fetal Heart	heart
44	chr10:97361400-97364400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:97361400-97364400	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr10:97361400-97364400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr10:97361400-97364600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr10:97361400-97365200	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:97361400-97365800	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr10:97361400-97366600	Weak transcription	K562	blood

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