Variant report

Variant	rs12259971
Chromosome Location	chr10:97358047-97358048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10882623	0.92[ASN][1000 genomes]
rs10882624	0.92[ASN][1000 genomes]
rs10882625	0.92[ASN][1000 genomes]
rs10882626	0.92[ASN][1000 genomes]
rs10882627	0.92[ASN][1000 genomes]
rs10882628	0.92[ASN][1000 genomes]
rs10882629	0.92[ASN][1000 genomes]
rs10882630	0.89[ASN][1000 genomes]
rs10882631	0.92[ASN][1000 genomes]
rs10882632	0.92[ASN][1000 genomes]
rs10882633	0.89[ASN][1000 genomes]
rs10882634	0.89[ASN][1000 genomes]
rs10882635	0.89[ASN][1000 genomes]
rs10882636	0.92[ASN][1000 genomes]
rs11188366	0.92[ASN][1000 genomes]
rs11188367	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11188368	0.92[ASN][1000 genomes]
rs11188369	0.92[ASN][1000 genomes]
rs11188370	0.92[ASN][1000 genomes]
rs11188371	0.92[ASN][1000 genomes]
rs11188376	0.92[ASN][1000 genomes]
rs11188389	0.92[ASN][1000 genomes]
rs12218873	0.89[ASN][1000 genomes]
rs12242866	0.92[ASN][1000 genomes]
rs12242918	0.92[ASN][1000 genomes]
rs12242923	0.92[ASN][1000 genomes]
rs12248661	0.92[ASN][1000 genomes]
rs12250514	0.92[ASN][1000 genomes]
rs12255572	0.92[ASN][1000 genomes]
rs12257523	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12263982	0.92[ASN][1000 genomes]
rs12264173	0.89[ASN][1000 genomes]
rs12267675	0.81[ASN][1000 genomes]
rs12269408	0.92[ASN][1000 genomes]
rs6584010	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7081293	0.92[ASN][1000 genomes]
rs7085365	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7086374	0.89[ASN][1000 genomes]
rs7099430	0.81[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7099515	0.92[ASN][1000 genomes]
rs73325155	0.92[ASN][1000 genomes]
rs73325195	0.89[ASN][1000 genomes]
rs7896068	0.92[ASN][1000 genomes]
rs7900149	0.92[ASN][1000 genomes]
rs7903143	0.83[ASN][1000 genomes]
rs7912555	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7914594	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7914886	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7915910	0.89[ASN][1000 genomes]
rs7915912	0.90[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas
2	chr10:97357600-97360400	Weak transcription	HepG2	liver

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