Variant report

Variant	rs7900029
Chromosome Location	chr10:97354910-97354911
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10882625	1.00[AMR][1000 genomes]
rs10882636	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12257523	1.00[AMR][1000 genomes]
rs12269408	1.00[AMR][1000 genomes]
rs6584010	1.00[AMR][1000 genomes]
rs7085365	1.00[AMR][1000 genomes]
rs7896181	1.00[AMR][1000 genomes]
rs7912555	1.00[AMR][1000 genomes]
rs7914594	1.00[AMR][1000 genomes]
rs7914886	1.00[AMR][1000 genomes]
rs7915912	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526180	chr10:97332195-97511037	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv948146	chr10:97350519-97357135	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97335200-97373400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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