Variant report

Variant	rs4131239
Chromosome Location	chr3:155104305-155104306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155104170..155106327-chr3:155107833..155110799,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs56250229	1.00[EUR][1000 genomes]
rs57740484	1.00[EUR][1000 genomes]
rs57918571	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58776460	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58796745	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59830447	0.83[AMR][1000 genomes]
rs60095663	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60366830	1.00[EUR][1000 genomes]
rs61092254	0.83[AMR][1000 genomes]
rs61472530	1.00[EUR][1000 genomes]
rs6440978	0.83[AMR][1000 genomes]
rs6769078	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6782454	1.00[EUR][1000 genomes]
rs73007873	0.83[AMR][1000 genomes]
rs73007880	1.00[EUR][1000 genomes]
rs73007884	1.00[EUR][1000 genomes]
rs73007885	1.00[EUR][1000 genomes]
rs73007888	1.00[EUR][1000 genomes]
rs73007889	1.00[EUR][1000 genomes]
rs73007895	1.00[EUR][1000 genomes]
rs73007897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73007899	1.00[EUR][1000 genomes]
rs73007902	1.00[EUR][1000 genomes]
rs73873162	1.00[EUR][1000 genomes]
rs7629380	1.00[MEX][hapmap]
rs7637151	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155097000-155109400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:155101800-155109000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:155102200-155109200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155103000-155105800	Enhancers	Fetal Lung	lung
5	chr3:155103800-155104400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:155103800-155104600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:155103800-155104600	Enhancers	Fetal Muscle Leg	muscle
8	chr3:155103800-155104600	Enhancers	NHDF-Ad	bronchial
9	chr3:155103800-155105800	Enhancers	Fetal Brain Male	brain
10	chr3:155104000-155104800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:155104000-155104800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:155104000-155105400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:155104000-155105400	Enhancers	Fetal Brain Female	brain
14	chr3:155104000-155105600	Enhancers	Fetal Kidney	kidney
15	chr3:155104000-155105800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:155104000-155108000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:155104200-155104400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr3:155104200-155104800	Enhancers	Fetal Muscle Trunk	muscle
19	chr3:155104200-155104800	Enhancers	Fetal Stomach	stomach
20	chr3:155104200-155105600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:155104200-155105600	Enhancers	Right Atrium	heart

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