Variant report

Variant	rs6769078
Chromosome Location	chr3:155082466-155082467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs4131239	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57918571	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58776460	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs58796745	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59830447	1.00[AMR][1000 genomes]
rs60095663	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61092254	1.00[AMR][1000 genomes]
rs6440978	1.00[AMR][1000 genomes]
rs73007873	1.00[AMR][1000 genomes]
rs73007897	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7637151	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs9849682	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1013515	chr3:155065109-155095455	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1011988	chr3:155070152-155089985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155079800-155083000	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:155080400-155083000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:155081400-155082800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
4	chr3:155081600-155083000	Enhancers	Liver	Liver
5	chr3:155082000-155083400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:155082000-155083600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr3:155082000-155088800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:155082200-155083600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
9	chr3:155082400-155082600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:155082400-155082600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
11	chr3:155082400-155083400	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:155082400-155083600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links