Variant report

Variant	rs73007873
Chromosome Location	chr3:155088417-155088418
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155076882..155078450-chr3:155086803..155088719,2	K562	blood:
2	chr3:155083019..155084599-chr3:155087307..155088949,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs4131239	0.83[AMR][1000 genomes]
rs57918571	0.83[AMR][1000 genomes]
rs58776460	0.83[AMR][1000 genomes]
rs58796745	0.83[AMR][1000 genomes]
rs59830447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60095663	0.83[AMR][1000 genomes]
rs61092254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6440978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6769078	1.00[AMR][1000 genomes]
rs73007897	0.83[AMR][1000 genomes]
rs7637151	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1013515	chr3:155065109-155095455	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1011988	chr3:155070152-155089985	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155082000-155088800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr3:155084400-155088800	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:155085000-155091000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:155085000-155091000	Enhancers	Fetal Lung	lung
5	chr3:155085400-155089000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:155085600-155089000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:155085600-155089000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr3:155085800-155090200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr3:155086000-155088600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:155087000-155091200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr3:155087200-155088600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr3:155087200-155089000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:155087200-155089000	Enhancers	Right Ventricle	heart
14	chr3:155087200-155089400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr3:155087400-155089000	Enhancers	Right Atrium	heart
16	chr3:155087600-155088800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:155087600-155089200	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr3:155087600-155089200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:155087600-155089200	Enhancers	Fetal Muscle Leg	muscle
20	chr3:155087600-155089400	Enhancers	Left Ventricle	heart
21	chr3:155087600-155090000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:155087800-155088600	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr3:155088000-155088600	Enhancers	Adipose Nuclei	Adipose
24	chr3:155088000-155088600	Enhancers	Fetal Heart	heart
25	chr3:155088200-155088600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:155088200-155089600	Enhancers	K562	blood
27	chr3:155088400-155089000	Weak transcription	Psoas Muscle	Psoas
28	chr3:155088400-155089000	Enhancers	HSMMtube	muscle
29	chr3:155088400-155090200	Weak transcription	Fetal Stomach	stomach

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