Variant report

Variant	rs41420550
Chromosome Location	chr5:91971171-91971172
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17664218	1.00[AMR][1000 genomes]
rs62366738	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62366741	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62366759	1.00[AMR][1000 genomes]
rs62368463	1.00[AMR][1000 genomes]
rs62368466	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv882379	chr5:91938705-92064532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91967200-91973000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:91968000-91971200	Enhancers	Fetal Lung	lung
3	chr5:91968800-91971200	Enhancers	Fetal Kidney	kidney
4	chr5:91969000-91974000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:91970200-91971400	Enhancers	Fetal Intestine Small	intestine
6	chr5:91970400-91971200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr5:91970600-91971200	Enhancers	Fetal Intestine Large	intestine
8	chr5:91970800-91971200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:91971000-91971200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:91971000-91971200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:91971000-91971200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:91971000-91976800	Weak transcription	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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