Variant report

Variant	rs62366759
Chromosome Location	chr5:91979738-91979739
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17664218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41420550	1.00[AMR][1000 genomes]
rs62366738	0.90[AMR][1000 genomes]
rs62366741	0.86[AMR][1000 genomes]
rs62368463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62368466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv882379	chr5:91938705-92064532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91977400-91980200	Weak transcription	Fetal Heart	heart
2	chr5:91977600-91979800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:91977600-91980200	Weak transcription	Adipose Nuclei	Adipose
4	chr5:91977600-91981000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:91978000-91979800	Weak transcription	Liver	Liver
6	chr5:91978000-91980000	Weak transcription	HepG2	liver
7	chr5:91978000-91987800	Weak transcription	Fetal Lung	lung
8	chr5:91978200-91980200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:91978200-91980200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr5:91978400-91980000	Weak transcription	Fetal Intestine Small	intestine
11	chr5:91978600-91980200	Weak transcription	Fetal Kidney	kidney
12	chr5:91979000-91979800	Weak transcription	Fetal Intestine Large	intestine
13	chr5:91979200-91980200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:91979600-91980400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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