Variant report

Variant	rs62366741
Chromosome Location	chr5:91973325-91973326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17664218	0.86[AMR][1000 genomes]
rs41420550	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62366738	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62366759	0.86[AMR][1000 genomes]
rs62368463	0.86[AMR][1000 genomes]
rs62368466	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv882379	chr5:91938705-92064532	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:91969000-91974000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:91971000-91976800	Weak transcription	Fetal Stomach	stomach
3	chr5:91971200-91975200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:91971200-91976600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:91971200-91976600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:91971200-91976800	Weak transcription	Fetal Intestine Large	intestine
7	chr5:91971400-91976400	Weak transcription	Fetal Intestine Small	intestine
8	chr5:91972200-91973400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:91972400-91973800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr5:91972600-91973600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:91972600-91973600	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr5:91972600-91974000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:91972800-91973800	Enhancers	Fetal Lung	lung
14	chr5:91973000-91973600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr5:91973000-91974000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:91973000-91976600	Enhancers	Fetal Kidney	kidney
17	chr5:91973200-91974000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr5:91973200-91974200	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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