Variant report

Variant	rs41425348
Chromosome Location	chr5:94213394-94213395
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94141467..94144189-chr5:94211080..94213716,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12518206	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518627	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs152285	1.00[CHD][hapmap]
rs153845	1.00[CHD][hapmap]
rs153896	1.00[CHD][hapmap]
rs159598	1.00[CHD][hapmap]
rs17084095	1.00[CHD][hapmap]
rs17084334	1.00[CHB][hapmap]
rs17335178	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17335290	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes]
rs17420590	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17422496	1.00[CHB][hapmap]
rs1981847	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255209	1.00[CHD][hapmap]
rs41459348	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs499927	1.00[CHD][hapmap]
rs56025104	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs573164	1.00[CHD][hapmap]
rs6888297	1.00[CHD][hapmap]
rs72775372	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72775375	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72775382	0.86[ASN][1000 genomes]
rs72775384	0.86[ASN][1000 genomes]
rs72775387	0.86[ASN][1000 genomes]
rs72775388	0.86[ASN][1000 genomes]
rs72890	1.00[CHD][hapmap]
rs73776949	0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs41425348	DSTYK	trans	lymphoblastoid	seeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94200800-94236600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94204400-94240600	Weak transcription	Lung	lung
5	chr5:94206800-94230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94207000-94227000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94207200-94223600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94207200-94230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94208800-94220000	Weak transcription	Brain Anterior Caudate	brain
11	chr5:94209400-94223000	Weak transcription	HUVEC	blood vessel
12	chr5:94211400-94224200	Weak transcription	Primary T cells from cord blood	blood
13	chr5:94212600-94213800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:94213000-94214400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr5:94213200-94213800	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links