Variant report

Variant	rs499927
Chromosome Location	chr5:94195464-94195465
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94190382..94191968-chr5:94194901..94196604,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs103258	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes]
rs12518627	1.00[CHD][hapmap]
rs13359541	0.90[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs152285	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.81[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs152286	0.88[CEU][hapmap]
rs153844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs153845	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs153849	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs153896	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.86[MEX][hapmap];0.81[TSI][hapmap];0.91[EUR][1000 genomes]
rs159598	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs159600	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs159601	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs168846	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17084095	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];0.85[AMR][1000 genomes]
rs17335290	1.00[CHD][hapmap]
rs173870	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs17420590	1.00[CHD][hapmap]
rs255208	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs255209	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.85[MEX][hapmap];0.81[TSI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs32908	1.00[CHB][hapmap]
rs41425348	1.00[CHD][hapmap]
rs41459348	1.00[CHD][hapmap]
rs573164	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6867377	1.00[CHB][hapmap];0.85[AMR][1000 genomes]
rs6888297	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap]
rs72890	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7712065	1.00[JPT][hapmap]
rs7721663	0.86[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94163800-94209800	Weak transcription	Dnd41	blood
2	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
5	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94186000-94200400	Weak transcription	Primary T cells from cord blood	blood
7	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
8	chr5:94189800-94199400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:94190200-94196000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr5:94191400-94199000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr5:94191400-94199200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr5:94191600-94199200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:94193000-94196600	Weak transcription	HUVEC	blood vessel
15	chr5:94193000-94201600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr5:94193200-94202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr5:94193400-94200200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr5:94194000-94209200	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr5:94194200-94204200	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:94194600-94197000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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