Variant report

Variant	rs153844
Chromosome Location	chr5:94186216-94186217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:93860369..93860877-chr5:94185891..94186598,2	K562	blood:
2	chr5:94166198..94167055-chr5:94186086..94186919,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs103258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13359541	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs152285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs152286	0.88[CEU][hapmap]
rs153845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs168846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17084095	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs173870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs255208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs32908	1.00[CHB][hapmap]
rs499927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs573164	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs58209835	0.80[EUR][1000 genomes]
rs61327121	0.80[EUR][1000 genomes]
rs6867377	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6888297	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs72890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94163800-94209800	Weak transcription	Dnd41	blood
3	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
5	chr5:94170600-94187400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr5:94173000-94189000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:94176600-94190000	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:94179800-94188200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
11	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr5:94183600-94188800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:94183800-94189000	Weak transcription	HUVEC	blood vessel
14	chr5:94183800-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:94184800-94186400	Enhancers	Fetal Thymus	thymus
16	chr5:94184800-94186600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:94185200-94186400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr5:94185200-94186400	Enhancers	Fetal Brain Male	brain
19	chr5:94185200-94186600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr5:94185200-94186600	Enhancers	Hela-S3	cervix
21	chr5:94185400-94186400	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr5:94185400-94186400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr5:94185400-94186400	Enhancers	Brain Hippocampus Middle	brain
24	chr5:94185400-94186600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr5:94185400-94189000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:94185600-94186400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr5:94185600-94186400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:94185800-94186400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
29	chr5:94185800-94186400	Enhancers	Brain Substantia Nigra	brain
30	chr5:94185800-94186400	Enhancers	Fetal Brain Female	brain
31	chr5:94185800-94186400	Enhancers	Fetal Kidney	kidney
32	chr5:94185800-94186400	Active TSS	Fetal Lung	lung
33	chr5:94185800-94186400	Enhancers	Fetal Stomach	stomach
34	chr5:94185800-94186400	Enhancers	NH-A	brain
35	chr5:94186000-94188600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr5:94186000-94189000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr5:94186000-94189000	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr5:94186000-94200400	Weak transcription	Primary T cells from cord blood	blood
39	chr5:94186200-94186400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr5:94186200-94186400	Enhancers	Brain Anterior Caudate	brain
41	chr5:94186200-94186400	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr5:94186200-94186800	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr5:94186200-94188600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr5:94186200-94188600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr5:94186200-94189400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr5:94186200-94194000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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