Variant report

Variant	rs153845
Chromosome Location	chr5:94185703-94185704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs103258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12518627	1.00[CHD][hapmap]
rs13359541	0.90[GIH][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs152285	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.88[MEX][hapmap];0.87[MKK][hapmap];0.90[TSI][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153849	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159598	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159603	0.80[CEU][hapmap]
rs168846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17084095	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17335290	1.00[CHD][hapmap]
rs173870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17420590	1.00[CHD][hapmap]
rs255208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs255211	0.80[CEU][hapmap]
rs32908	1.00[CHB][hapmap]
rs41425348	1.00[CHD][hapmap]
rs41459348	1.00[CHD][hapmap]
rs499927	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.86[MEX][hapmap];0.90[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs573164	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.90[TSI][hapmap]
rs58209835	0.80[EUR][1000 genomes]
rs61327121	0.80[EUR][1000 genomes]
rs6867377	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6888297	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];0.80[EUR][1000 genomes]
rs72890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94163800-94209800	Weak transcription	Dnd41	blood
3	chr5:94164000-94185800	Weak transcription	Primary T cells from cord blood	blood
4	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
6	chr5:94169200-94185800	Weak transcription	Fetal Brain Female	brain
7	chr5:94170600-94187400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94173000-94189000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:94176000-94186000	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94176600-94190000	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:94179800-94188200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
14	chr5:94182600-94185800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:94183200-94185800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:94183600-94188800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:94183800-94185800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:94183800-94189000	Weak transcription	HUVEC	blood vessel
20	chr5:94183800-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:94184800-94186400	Enhancers	Fetal Thymus	thymus
22	chr5:94184800-94186600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:94185200-94185800	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr5:94185200-94185800	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr5:94185200-94186000	Enhancers	Thymus	Thymus
26	chr5:94185200-94186200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr5:94185200-94186400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr5:94185200-94186400	Enhancers	Fetal Brain Male	brain
29	chr5:94185200-94186600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr5:94185200-94186600	Enhancers	Hela-S3	cervix
31	chr5:94185400-94185800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr5:94185400-94185800	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr5:94185400-94186000	Enhancers	H1 Cell Line	embryonic stem cell
34	chr5:94185400-94186400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr5:94185400-94186400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr5:94185400-94186400	Enhancers	Brain Hippocampus Middle	brain
37	chr5:94185400-94186600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:94185400-94189000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr5:94185600-94185800	Active TSS	Brain Angular Gyrus	brain
40	chr5:94185600-94185800	Enhancers	Brain Anterior Caudate	brain
41	chr5:94185600-94185800	Enhancers	Brain Cingulate Gyrus	brain
42	chr5:94185600-94185800	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr5:94185600-94186000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr5:94185600-94186000	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr5:94185600-94186000	Enhancers	Brain Germinal Matrix	brain
46	chr5:94185600-94186400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
47	chr5:94185600-94186400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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