Variant report

Variant	rs13359541
Chromosome Location	chr5:94147866-94147867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94146676..94148666-chr5:94148670..94150444,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs103258	1.00[JPT][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108971	0.88[AFR][1000 genomes]
rs152285	0.86[GIH][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs153844	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs153845	0.90[GIH][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs153849	0.84[ASN][1000 genomes]
rs153896	1.00[GIH][hapmap];0.86[MEX][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159598	0.90[GIH][hapmap];0.86[MEX][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159600	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159601	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs168846	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084095	0.86[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173870	0.92[ASN][1000 genomes]
rs255208	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255209	0.86[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MEX][hapmap];0.89[MKK][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs499927	0.90[GIH][hapmap];1.00[MEX][hapmap];0.82[AMR][1000 genomes]
rs57297740	0.90[EUR][1000 genomes]
rs573164	0.89[GIH][hapmap];1.00[MEX][hapmap]
rs58209835	0.92[EUR][1000 genomes]
rs59357233	0.92[EUR][1000 genomes]
rs61327121	0.92[EUR][1000 genomes]
rs6867377	0.88[CEU][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6888297	0.95[GIH][hapmap];0.85[MEX][hapmap];0.92[EUR][1000 genomes]
rs72890	0.95[GIH][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73133918	0.90[EUR][1000 genomes]
rs73133946	0.92[EUR][1000 genomes]
rs73133954	0.94[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130200-94161600	Weak transcription	HUVEC	blood vessel
2	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr5:94134600-94164000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:94137600-94170400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94140200-94163800	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:94146400-94148600	Weak transcription	Fetal Brain Male	brain
7	chr5:94147400-94148000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:94147600-94148000	Weak transcription	Fetal Thymus	thymus

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