Variant report

Variant	rs159600
Chromosome Location	chr5:94178129-94178130
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94177586..94179304-chr5:94195770..94198310,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs103258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12108971	0.90[AFR][1000 genomes]
rs13359541	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs152285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs153844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs153845	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs153849	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs153896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159598	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs159601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159603	0.80[CEU][hapmap]
rs168846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17084095	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs173870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs255208	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255209	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs255211	0.80[CEU][hapmap]
rs32908	1.00[CHB][hapmap]
rs499927	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs573164	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs58209835	0.80[EUR][1000 genomes]
rs61327121	0.80[EUR][1000 genomes]
rs6867377	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6877335	1.00[CHB][hapmap]
rs6888297	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs72890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94130400-94192400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr5:94162400-94184800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:94163400-94182600	Weak transcription	Brain Anterior Caudate	brain
4	chr5:94163800-94209800	Weak transcription	Dnd41	blood
5	chr5:94164000-94185800	Weak transcription	Primary T cells from cord blood	blood
6	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:94165200-94183400	Weak transcription	Lung	lung
8	chr5:94165400-94185600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:94165600-94182200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94165800-94182400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:94165800-94183400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
13	chr5:94169200-94185800	Weak transcription	Fetal Brain Female	brain
14	chr5:94170200-94182600	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr5:94170600-94187400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:94170800-94185200	Weak transcription	Fetal Brain Male	brain
17	chr5:94171600-94185200	Weak transcription	Left Ventricle	heart
18	chr5:94173000-94189000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr5:94173800-94179400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:94174600-94179000	Weak transcription	HUVEC	blood vessel
21	chr5:94175600-94194600	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr5:94176000-94185200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr5:94176000-94186000	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr5:94176600-94190000	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:94177800-94183200	Weak transcription	Thymus	Thymus
26	chr5:94178000-94179000	Weak transcription	Fetal Thymus	thymus

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