Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr14:70924060-70924193	GM12878	blood:	n/a	n/a
2	POLR2A	chr14:70924012-70924196	A549	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ADAM21-1	chr14:70924066-70924555	ENSG00000258801

Variant related genes	Relation type
ADAM21	TF binding region

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10131943	0.81[JPT][hapmap]
rs11625168	0.87[JPT][hapmap]
rs12436464	0.98[ASN][1000 genomes]
rs12436902	0.94[ASN][1000 genomes]
rs12586325	0.86[CHB][hapmap]
rs12586328	0.86[CHB][hapmap]
rs12586722	0.94[ASN][1000 genomes]
rs12590401	0.85[CEU][hapmap]
rs12590610	0.85[CEU][hapmap]
rs1538403	0.85[CEU][hapmap]
rs17107997	0.81[AMR][1000 genomes]
rs17108107	0.95[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];0.93[ASN][1000 genomes]
rs17108176	0.81[AMR][1000 genomes]
rs1953798	0.86[CHB][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap]
rs1959483	0.86[CHB][hapmap];0.96[GIH][hapmap];0.85[MEX][hapmap]
rs3751523	0.91[ASN][1000 genomes]
rs3764182	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4902815	0.86[CEU][hapmap]
rs4902817	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs7150354	0.91[CEU][hapmap]
rs7150428	0.94[ASN][1000 genomes]
rs7154904	0.92[CEU][hapmap]
rs7159587	0.92[ASN][1000 genomes]
rs7161249	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs72735756	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73291972	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8008210	0.81[ASN][1000 genomes]
rs8012142	0.92[ASN][1000 genomes]
rs8014252	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8014338	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs8015163	0.94[ASN][1000 genomes]
rs8020009	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv976352	chr14:70924060-70926861	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4143920	MED6	cis	parietal	SCAN
rs4143920	ADAM20	cis	cerebellum	SCAN
rs4143920	MAP3K9	cis	cerebellum	SCAN
rs4143920	SLC8A3	cis	cerebellum	SCAN
rs4143920	MED6	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
2	chr14:70917000-70940200	Weak transcription	Aorta	Aorta
3	chr14:70921800-70940000	Weak transcription	Psoas Muscle	Psoas
4	chr14:70922000-70927200	Weak transcription	HSMMtube	muscle

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