Variant report

Variant	rs8014252
Chromosome Location	chr14:70919699-70919700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10131943	0.81[JPT][hapmap]
rs10142102	0.80[MEX][hapmap]
rs10483830	0.87[CEU][hapmap]
rs11625168	0.87[JPT][hapmap]
rs11844845	0.80[MEX][hapmap]
rs12436464	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436902	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586325	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12586328	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[EUR][1000 genomes]
rs12586722	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17107997	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17108107	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.93[MEX][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17108176	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17108246	0.87[CEU][hapmap]
rs17108264	0.87[CEU][hapmap]
rs17108274	0.87[CEU][hapmap]
rs17113651	0.87[CEU][hapmap]
rs1953798	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap]
rs1959483	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap]
rs1959486	0.81[AMR][1000 genomes]
rs2293877	0.86[AMR][1000 genomes]
rs2332389	0.81[AMR][1000 genomes]
rs2877657	0.80[MEX][hapmap]
rs34512695	0.81[AMR][1000 genomes]
rs3751523	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3764182	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4143920	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4902817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57146008	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61671382	0.81[AMR][1000 genomes]
rs7150428	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154884	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7159587	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7161249	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735756	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs73291972	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73293909	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8008210	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8012142	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8014338	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8015163	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8020009	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs8014252	ADAM20	cis	cerebellum	SCAN
rs8014252	PLEKHH1	cis	parietal	SCAN
rs8014252	MAP3K9	cis	cerebellum	SCAN
rs8014252	MED6	cis	cerebellum	SCAN
rs8014252	MED6	cis	parietal	SCAN
rs8014252	SLC8A3	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70908800-70921600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
3	chr14:70913200-70921600	Weak transcription	Adipose Nuclei	Adipose
4	chr14:70913800-70921400	Weak transcription	Ovary	ovary
5	chr14:70915600-70919800	Weak transcription	Fetal Heart	heart
6	chr14:70916600-70921600	Weak transcription	Psoas Muscle	Psoas
7	chr14:70917000-70921000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr14:70917000-70940200	Weak transcription	Aorta	Aorta

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