Variant report

Variant	rs34512695
Chromosome Location	chr14:70957675-70957676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12232170	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12436902	0.92[EUR][1000 genomes]
rs12586325	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12586328	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17107997	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17108176	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1953798	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1953802	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1959483	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1959484	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1959486	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2095807	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2293877	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2332389	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28641689	0.82[ASN][1000 genomes]
rs4902827	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56778245	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56824265	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57146008	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61671382	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7143655	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7145265	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7152771	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154884	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7159432	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73293909	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73293935	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8014252	0.81[AMR][1000 genomes]
rs8014338	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8015163	0.92[EUR][1000 genomes]
rs8017584	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8021308	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70954800-70958600	ZNF genes & repeats	Lung	lung
2	chr14:70954800-70958800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr14:70955000-70957800	Weak transcription	HSMMtube	muscle
4	chr14:70955000-70958600	ZNF genes & repeats	Aorta	Aorta
5	chr14:70955000-70959200	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr14:70955400-70959200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
7	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
8	chr14:70955800-70958600	ZNF genes & repeats	Ovary	ovary
9	chr14:70955800-70958800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:70955800-70959200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
11	chr14:70956000-70958600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
12	chr14:70956000-70959200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
13	chr14:70956200-70958600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
14	chr14:70956200-70958600	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr14:70956400-70958400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
16	chr14:70956400-70958600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr14:70956600-70958000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart
19	chr14:70956800-70958800	ZNF genes & repeats	Liver	Liver
20	chr14:70956800-70961800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:70957000-70958200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
22	chr14:70957200-70958000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr14:70957200-70958800	ZNF genes & repeats	Brain Cingulate Gyrus	brain
24	chr14:70957400-70958400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
25	chr14:70957400-70958600	ZNF genes & repeats	Brain Angular Gyrus	brain
26	chr14:70957600-70963200	Weak transcription	Stomach Smooth Muscle	stomach

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