Variant report

Variant	rs1953802
Chromosome Location	chr14:70963808-70963809
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10483830	0.87[CEU][hapmap]
rs12232170	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12436902	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12586325	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12586328	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17107997	0.93[EUR][1000 genomes]
rs17108107	1.00[CEU][hapmap]
rs17108176	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108246	0.85[CEU][hapmap]
rs17108264	0.87[CEU][hapmap]
rs17108274	0.85[CEU][hapmap]
rs17113651	0.87[CEU][hapmap]
rs1953798	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1959483	1.00[CEU][hapmap];0.80[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1959484	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1959486	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2095807	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2293877	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2332389	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34512695	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902817	1.00[CEU][hapmap]
rs4902827	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56778245	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56824265	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57146008	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61671382	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7143655	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7145265	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7152771	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7154884	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7159432	0.93[EUR][1000 genomes]
rs73293909	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73293935	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8014252	1.00[CEU][hapmap]
rs8014338	0.89[EUR][1000 genomes]
rs8015163	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8017584	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8021308	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
2	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart
3	chr14:70958600-70964000	Weak transcription	Gastric	stomach
4	chr14:70958600-70966600	Weak transcription	Brain Anterior Caudate	brain
5	chr14:70958600-70967200	Weak transcription	Brain Angular Gyrus	brain
6	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr14:70958800-70964800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr14:70959200-70965400	Weak transcription	Brain Hippocampus Middle	brain
10	chr14:70959200-70965800	Weak transcription	Adipose Nuclei	Adipose
11	chr14:70959600-70965000	Weak transcription	Colon Smooth Muscle	Colon
12	chr14:70960000-70964600	Weak transcription	Primary B cells from peripheral blood	blood
13	chr14:70961000-70964400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:70962200-70964200	Strong transcription	Liver	Liver
15	chr14:70962400-70965000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
16	chr14:70963200-70964400	ZNF genes & repeats	Pancreas	Pancrea
17	chr14:70963200-70964800	ZNF genes & repeats	Aorta	Aorta
18	chr14:70963200-70965000	Strong transcription	Brain Inferior Temporal Lobe	brain
19	chr14:70963200-70965200	Strong transcription	Stomach Smooth Muscle	stomach
20	chr14:70963600-70964200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:70963800-70964200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:70963800-70964800	Weak transcription	Spleen	Spleen
23	chr14:70963800-70965000	Strong transcription	Skeletal Muscle Male	skeletal muscle

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