Variant report

Variant	rs12436902
Chromosome Location	chr14:70929096-70929097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10131943	0.81[JPT][hapmap]
rs10142102	0.80[MEX][hapmap]
rs10483830	0.87[CEU][hapmap]
rs11625168	0.87[JPT][hapmap]
rs11844845	0.80[MEX][hapmap]
rs12232170	0.90[EUR][1000 genomes]
rs12436464	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12586325	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12586328	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12586722	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17107997	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17108107	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.86[LWK][hapmap];0.93[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];0.94[YRI][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17108176	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17108246	0.87[CEU][hapmap]
rs17108264	0.87[CEU][hapmap]
rs17108274	0.87[CEU][hapmap]
rs17113651	0.87[CEU][hapmap]
rs1953798	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.97[TSI][hapmap];0.91[EUR][1000 genomes]
rs1953802	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1959483	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.92[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1959484	0.92[EUR][1000 genomes]
rs1959486	0.92[EUR][1000 genomes]
rs2095807	0.90[EUR][1000 genomes]
rs2293877	0.90[EUR][1000 genomes]
rs2332389	0.88[EUR][1000 genomes]
rs2877657	0.80[MEX][hapmap]
rs34512695	0.92[EUR][1000 genomes]
rs3751523	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3764182	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4143920	1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.94[ASN][1000 genomes]
rs4902817	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902827	0.89[EUR][1000 genomes]
rs56778245	0.90[EUR][1000 genomes]
rs56824265	0.87[EUR][1000 genomes]
rs57146008	0.95[EUR][1000 genomes]
rs61671382	0.92[EUR][1000 genomes]
rs7143655	0.86[EUR][1000 genomes]
rs7145265	0.90[EUR][1000 genomes]
rs7150428	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7152771	0.92[EUR][1000 genomes]
rs7154884	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7159432	0.89[EUR][1000 genomes]
rs7159587	0.88[ASN][1000 genomes]
rs7161249	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72735756	0.92[ASN][1000 genomes]
rs73291972	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73293909	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73293935	0.91[EUR][1000 genomes]
rs8012142	0.88[ASN][1000 genomes]
rs8014252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8014338	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8015163	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8017584	0.91[EUR][1000 genomes]
rs8020009	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8021308	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs12436902	SLC8A3	cis	cerebellum	SCAN
rs12436902	PLEKHH1	cis	parietal	SCAN
rs12436902	MED6	cis	cerebellum	SCAN
rs12436902	MAP3K9	cis	cerebellum	SCAN
rs12436902	ADAM20	cis	cerebellum	SCAN
rs12436902	MED6	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
2	chr14:70917000-70940200	Weak transcription	Aorta	Aorta
3	chr14:70921800-70940000	Weak transcription	Psoas Muscle	Psoas
4	chr14:70928800-70929600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:70928800-70930200	Enhancers	Fetal Heart	heart
6	chr14:70929000-70929400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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