Variant report

Variant	rs41443144
Chromosome Location	chr6:5849935-5849936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56369682	1.00[EUR][1000 genomes]
rs73366175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73366178	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720280	1.00[EUR][1000 genomes]
rs9504530	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5849000-5850600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr6:5849200-5850600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr6:5849200-5850800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:5849400-5850600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr6:5849400-5850600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr6:5849400-5851000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:5849400-5851000	Weak transcription	Right Atrium	heart
8	chr6:5849600-5850600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr6:5849800-5850000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:5849800-5850600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
11	chr6:5849800-5850800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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