Variant report

Variant	rs73366178
Chromosome Location	chr6:5851862-5851863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FARS2-1	chr6:5851739-5851895	XLOC_005144
2	lnc-FARS2-1	chr6:5851739-5851895	ENSG00000233064.2

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs41443144	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56369682	1.00[EUR][1000 genomes]
rs73366175	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73720280	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5183	chr6:5821731-5866796	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:5850800-5852200	Active TSS	Brain Cingulate Gyrus	brain
2	chr6:5850800-5852200	Active TSS	Fetal Brain Female	brain
3	chr6:5850800-5852400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr6:5851000-5852000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:5851000-5852000	Active TSS	Brain Hippocampus Middle	brain
6	chr6:5851000-5852000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
7	chr6:5851000-5852000	Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr6:5851000-5852000	Active TSS	Right Atrium	heart
9	chr6:5851000-5852000	Active TSS	Right Ventricle	heart
10	chr6:5851000-5852000	Enhancers	Spleen	Spleen
11	chr6:5851000-5852200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:5851000-5852200	Active TSS	Primary T cells from cord blood	blood
13	chr6:5851000-5852200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr6:5851000-5852200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr6:5851000-5852200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:5851000-5852200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:5851000-5852200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:5851000-5852200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr6:5851000-5852200	Active TSS	Brain Substantia Nigra	brain
20	chr6:5851000-5852400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr6:5851000-5852400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
22	chr6:5851000-5852400	Active TSS	Brain Anterior Caudate	brain
23	chr6:5851200-5852000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr6:5851200-5852000	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr6:5851200-5852000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
26	chr6:5851200-5852000	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:5851200-5852000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:5851200-5852000	Bivalent/Poised TSS	Fetal Intestine Large	intestine
29	chr6:5851200-5852000	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
30	chr6:5851200-5852000	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
31	chr6:5851200-5852000	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
32	chr6:5851200-5852000	Bivalent/Poised TSS	HSMM	muscle
33	chr6:5851200-5852000	Bivalent/Poised TSS	HSMMtube	muscle
34	chr6:5851200-5852000	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
35	chr6:5851200-5852200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr6:5851200-5852200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
37	chr6:5851200-5852200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
38	chr6:5851200-5852200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr6:5851200-5852200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr6:5851200-5852200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:5851200-5852200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr6:5851200-5852200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr6:5851200-5852200	Active TSS	Brain Angular Gyrus	brain
44	chr6:5851200-5852200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
45	chr6:5851200-5852200	Bivalent/Poised TSS	GM12878-XiMat	blood
46	chr6:5851200-5852400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
47	chr6:5851200-5852400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
48	chr6:5851400-5852000	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:5851400-5852000	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:5851400-5852000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links