Variant report

Variant	rs41489047
Chromosome Location	chr6:69484445-69484446
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11961010	1.00[AMR][1000 genomes]
rs11961167	1.00[AMR][1000 genomes]
rs11969579	1.00[AMR][1000 genomes]
rs16900148	1.00[AMR][1000 genomes]
rs58953691	1.00[AMR][1000 genomes]
rs59471717	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60852929	1.00[AMR][1000 genomes]
rs6916446	1.00[AMR][1000 genomes]
rs6918766	1.00[ASW][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745847	1.00[AMR][1000 genomes]
rs73745877	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745878	1.00[AMR][1000 genomes]
rs73748137	1.00[AMR][1000 genomes]
rs7747951	1.00[AMR][1000 genomes]
rs7761974	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv886131	chr6:69480628-69545903	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69467200-69485000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69478000-69485000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69480400-69484800	Weak transcription	Fetal Lung	lung
4	chr6:69481600-69484800	Weak transcription	K562	blood
5	chr6:69482200-69484600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69482400-69484800	Weak transcription	Fetal Brain Female	brain
7	chr6:69483400-69485000	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr6:69483600-69485200	Weak transcription	Brain Angular Gyrus	brain
9	chr6:69483800-69485000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:69484000-69485400	Weak transcription	Brain Germinal Matrix	brain
11	chr6:69484200-69484600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:69484400-69485000	Enhancers	Brain Hippocampus Middle	brain
13	chr6:69484400-69485200	Enhancers	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links