Variant report

Variant	rs7747951
Chromosome Location	chr6:69422582-69422583
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961010	1.00[AMR][1000 genomes]
rs11961167	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969579	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900148	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41489047	1.00[AMR][1000 genomes]
rs58953691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59471717	1.00[AMR][1000 genomes]
rs60852929	1.00[AMR][1000 genomes]
rs6916446	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918766	1.00[AMR][1000 genomes]
rs73745847	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745877	1.00[AMR][1000 genomes]
rs73745878	1.00[AMR][1000 genomes]
rs73748137	1.00[AMR][1000 genomes]
rs7739193	1.00[YRI][hapmap]
rs7761974	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772661	1.00[YRI][hapmap];0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69420200-69428600	Weak transcription	Fetal Brain Female	brain
2	chr6:69421400-69436400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69421800-69423200	Enhancers	Brain Substantia Nigra	brain
4	chr6:69421800-69424800	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69421800-69425800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr6:69421800-69428200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:69422000-69425800	Weak transcription	K562	blood
8	chr6:69422400-69422600	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:69422400-69423200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:69422400-69424600	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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