Variant report

Variant	rs7772661
Chromosome Location	chr6:69402061-69402062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11961167	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs11969579	0.95[AFR][1000 genomes]
rs16900148	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs58953691	0.97[AFR][1000 genomes]
rs6916446	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs73745847	0.86[AFR][1000 genomes]
rs73748135	1.00[AMR][1000 genomes]
rs7739193	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs7747951	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs7761974	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1015906	chr6:69376236-69416331	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69399400-69403800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:69400200-69405600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:69400200-69411200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:69400400-69405400	Weak transcription	Fetal Lung	lung
5	chr6:69400400-69407000	Weak transcription	Brain Substantia Nigra	brain
6	chr6:69401000-69402200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr6:69401400-69403000	Weak transcription	K562	blood
8	chr6:69401400-69405600	Weak transcription	Brain Hippocampus Middle	brain
9	chr6:69401400-69406600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69401400-69406600	Weak transcription	Brain Anterior Caudate	brain
11	chr6:69401400-69406800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:69401600-69405200	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr6:69401600-69406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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