Variant report

Variant	rs7761974
Chromosome Location	chr6:69446295-69446296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11961010	1.00[AMR][1000 genomes]
rs11961167	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969579	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16900148	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41489047	1.00[AMR][1000 genomes]
rs58953691	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59471717	1.00[AMR][1000 genomes]
rs60852929	1.00[AMR][1000 genomes]
rs6916446	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918766	1.00[AMR][1000 genomes]
rs73745847	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73745877	1.00[AMR][1000 genomes]
rs73745878	1.00[AMR][1000 genomes]
rs73748137	1.00[AMR][1000 genomes]
rs7739193	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs7747951	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7772661	1.00[YRI][hapmap];0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886130	chr6:68950298-69531957	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69440800-69456800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr6:69440800-69456800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:69441000-69449400	Weak transcription	Brain Substantia Nigra	brain
4	chr6:69441200-69448000	Weak transcription	Brain Angular Gyrus	brain
5	chr6:69442600-69447600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:69444800-69457000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69445600-69446600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:69445600-69448000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:69445800-69446400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:69446200-69446800	Enhancers	K562	blood
11	chr6:69446200-69447600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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