Variant report

Variant	rs41490646
Chromosome Location	chr4:76924408-76924409
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs55647336	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567974	1.00[AMR][1000 genomes]
rs59539700	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59610986	1.00[AMR][1000 genomes]
rs59666396	1.00[AMR][1000 genomes]
rs73825708	1.00[AMR][1000 genomes]
rs73825717	1.00[AMR][1000 genomes]
rs73825721	1.00[AMR][1000 genomes]
rs73825725	1.00[AMR][1000 genomes]
rs73825726	1.00[AMR][1000 genomes]
rs73825730	1.00[AMR][1000 genomes]
rs73825731	1.00[AMR][1000 genomes]
rs73825733	1.00[AMR][1000 genomes]
rs73825868	1.00[AMR][1000 genomes]
rs73825877	1.00[AMR][1000 genomes]
rs73825879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76912400-76932200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:76922800-76924600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr4:76923000-76925400	Enhancers	Dnd41	blood
4	chr4:76923400-76924600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:76923800-76925200	Enhancers	Left Ventricle	heart
6	chr4:76924000-76925400	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr4:76924000-76927800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr4:76924200-76925400	Enhancers	Fetal Thymus	thymus
9	chr4:76924200-76927000	Weak transcription	Fetal Intestine Large	intestine
10	chr4:76924200-76927200	Weak transcription	Fetal Intestine Small	intestine
11	chr4:76924400-76924800	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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