Variant report

Variant	rs73825877
Chromosome Location	chr4:76998034-76998035
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs41490646	1.00[AMR][1000 genomes]
rs55647336	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567974	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59539700	1.00[AMR][1000 genomes]
rs59610986	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59666396	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825708	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825725	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825730	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825868	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76995600-76999400	Active TSS	Psoas Muscle	Psoas
2	chr4:76995600-77000800	Active TSS	Skeletal Muscle Female	skeletal muscle
3	chr4:76995800-76998200	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr4:76995800-76999000	Active TSS	Right Ventricle	heart
5	chr4:76996400-76999000	Weak transcription	HSMMtube	muscle
6	chr4:76997000-76998200	Weak transcription	Left Ventricle	heart
7	chr4:76997000-76998400	Weak transcription	Fetal Heart	heart
8	chr4:76997000-77007200	Weak transcription	Fetal Brain Male	brain
9	chr4:76997000-77008000	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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