Variant report

Variant	rs73825868
Chromosome Location	chr4:76996203-76996204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:76996142-76996780	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
ART3	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs41490646	1.00[AMR][1000 genomes]
rs55647336	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57567974	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59539700	1.00[AMR][1000 genomes]
rs59610986	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59666396	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825708	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825717	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825721	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825726	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825730	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825731	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825733	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825877	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73825879	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1009047	chr4:76989180-77077885	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76994000-76996600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:76994400-76996400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr4:76995200-76996400	Enhancers	Brain Anterior Caudate	brain
4	chr4:76995200-76996400	Enhancers	Rectal Smooth Muscle	rectum
5	chr4:76995200-76996600	Enhancers	Colon Smooth Muscle	Colon
6	chr4:76995200-76996600	Enhancers	Stomach Smooth Muscle	stomach
7	chr4:76995400-76996400	Enhancers	HSMMtube	muscle
8	chr4:76995400-76996600	Enhancers	Brain Hippocampus Middle	brain
9	chr4:76995400-76996600	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr4:76995400-76997000	Enhancers	Brain Angular Gyrus	brain
11	chr4:76995600-76996800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:76995600-76997000	Enhancers	Brain Substantia Nigra	brain
13	chr4:76995600-76999400	Active TSS	Psoas Muscle	Psoas
14	chr4:76995600-77000800	Active TSS	Skeletal Muscle Female	skeletal muscle
15	chr4:76995800-76996400	Weak transcription	Fetal Brain Male	brain
16	chr4:76995800-76996600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr4:76995800-76996800	Flanking Active TSS	Brain Cingulate Gyrus	brain
18	chr4:76995800-76997000	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr4:76995800-76997000	Enhancers	Fetal Heart	heart
20	chr4:76995800-76997000	Active TSS	Left Ventricle	heart
21	chr4:76995800-76998200	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr4:76995800-76999000	Active TSS	Right Ventricle	heart
23	chr4:76996000-76996600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:76996000-76996800	Active TSS	Right Atrium	heart

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