Variant report

Variant	rs41502046
Chromosome Location	chr15:58681277-58681278
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:58676848..58679438-chr15:58681063..58682805,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13329503	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13329676	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16940144	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16940188	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16940200	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16940207	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16940233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs261285	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs28461450	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28575432	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28829404	0.85[EUR][1000 genomes]
rs28847410	0.83[EUR][1000 genomes]
rs28866564	0.85[EUR][1000 genomes]
rs414846	0.85[ASN][1000 genomes]
rs432029	0.85[ASN][1000 genomes]
rs58132803	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58679400-58681800	Weak transcription	Fetal Kidney	kidney
2	chr15:58679400-58690600	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:58679600-58681800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:58679800-58681400	Weak transcription	HMEC	breast
5	chr15:58680000-58681400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:58680000-58681600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:58680000-58681600	Weak transcription	NH-A	brain
8	chr15:58680000-58681800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:58680000-58682000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:58680000-58683600	Weak transcription	HSMMtube	muscle
11	chr15:58680000-58688000	Weak transcription	NHLF	lung
12	chr15:58680200-58681400	Weak transcription	Osteobl	bone
13	chr15:58680200-58681800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:58680200-58682200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:58680400-58681400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:58680400-58681400	Weak transcription	NHDF-Ad	bronchial
17	chr15:58680800-58682000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:58681000-58682200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:58681000-58682200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr15:58681000-58686000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:58681000-58686000	Enhancers	Placenta	Placenta
22	chr15:58681000-58686200	Enhancers	Liver	Liver
23	chr15:58681200-58681600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr15:58681200-58681600	Enhancers	Pancreas	Pancrea
25	chr15:58681200-58682000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:58681200-58682000	Enhancers	HepG2	liver
27	chr15:58681200-58682400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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