Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11033760	0.83[ASN][1000 genomes]
rs11033761	0.83[ASN][1000 genomes]
rs11821147	0.83[ASN][1000 genomes]
rs11827933	0.83[ASN][1000 genomes]
rs12271707	0.83[ASN][1000 genomes]
rs12293177	0.83[ASN][1000 genomes]
rs12294817	0.83[ASN][1000 genomes]
rs12421514	1.00[JPT][hapmap]
rs16929126	1.00[JPT][hapmap]
rs16929138	1.00[JPT][hapmap]
rs16929326	0.83[ASN][1000 genomes]
rs16929333	0.83[ASN][1000 genomes]
rs16929339	0.83[ASN][1000 genomes]
rs2037101	1.00[LWK][hapmap];1.00[MEX][hapmap]
rs2458930	1.00[JPT][hapmap]
rs4150997	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4150998	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4151016	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4151019	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4151041	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4151042	1.00[ASN][1000 genomes]
rs4151046	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs60156568	0.83[ASN][1000 genomes]
rs7130097	1.00[JPT][hapmap]
rs869207	1.00[JPT][hapmap]
rs871912	1.00[JPT][hapmap]
rs955772	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36586800-36599400	Weak transcription	Liver	Liver
2	chr11:36586800-36600200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:36589800-36600800	Transcr. at gene 5' and 3'	Dnd41	blood
4	chr11:36593200-36597600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:36593200-36600800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
6	chr11:36593600-36598800	Weak transcription	Gastric	stomach
7	chr11:36594800-36598400	Transcr. at gene 5' and 3'	Thymus	Thymus
8	chr11:36595000-36596600	Strong transcription	Left Ventricle	heart
9	chr11:36595000-36597400	Strong transcription	Spleen	Spleen
10	chr11:36595200-36597000	Strong transcription	Fetal Intestine Small	intestine
11	chr11:36595200-36598200	Weak transcription	Fetal Intestine Large	intestine
12	chr11:36595600-36597600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:36595800-36597400	Weak transcription	Right Ventricle	heart
14	chr11:36595800-36598800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:36595800-36600400	Weak transcription	Aorta	Aorta
16	chr11:36596200-36596600	Strong transcription	Primary hematopoietic stem cells	blood
17	chr11:36596400-36597800	Weak transcription	Fetal Muscle Leg	muscle
18	chr11:36596400-36598200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:36596400-36602400	Weak transcription	Pancreas	Pancrea

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