Variant report

Variant	rs41540318
Chromosome Location	chr6:31238334-31238335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31234521-31240439	GM12878	blood:	n/a	n/a
2	CEBPB	chr6:31238283-31238347	HepG2	liver:	n/a	n/a
3	POLR2A	chr6:31233706-31240407	GM12891	blood:	n/a	n/a
4	POLR2A	chr6:31237785-31238554	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr6:31233597-31240425	GM12891	blood:	n/a	n/a
6	POLR2A	chr6:31233096-31241392	GM12892	blood:	n/a	n/a
7	POU2F2	chr6:31237918-31238530	GM12891	blood:	n/a	n/a
8	POLR2A	chr6:31237159-31240295	GM12878	blood:	n/a	n/a
9	RFX5	chr6:31238270-31242325	SK-N-SH	brain:	n/a	chr6:31239918-31239927
10	POLR2A	chr6:31233216-31241351	GM12892	blood:	n/a	n/a
11	POLR2A	chr6:31233203-31241373	GM12892	blood:	n/a	n/a
12	POLR2A	chr6:31232959-31241452	GM12892	blood:	n/a	n/a
13	POU2F2	chr6:31237191-31240338	GM12878	blood:	n/a	n/a
14	POLR2A	chr6:31232877-31241483	GM12878	blood:	n/a	n/a
15	MTA3	chr6:31238088-31239031	GM12878	blood:	n/a	n/a
16	EBF1	chr6:31238174-31238454	GM12878	blood:	n/a	chr6:31238300-31238311
17	USF2	chr6:31238248-31238465	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:31236648-31240295	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:31233176-31240362	GM12891	blood:	n/a	n/a
20	POLR2A	chr6:31234345-31239130	GM12891	blood:	n/a	n/a
21	POLR2A	chr6:31232910-31241380	GM12878	blood:	n/a	n/a
22	POLR2A	chr6:31238261-31240307	GM19193	blood:	n/a	n/a
23	POLR2A	chr6:31233826-31240268	GM12878	blood:	n/a	n/a
24	USF1	chr6:31238199-31238388	HepG2	liver:	n/a	chr6:31238323-31238334
25	CEBPB	chr6:31238263-31238458	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
HLA-C	TF binding region

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1049724	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17191650	0.81[EUR][1000 genomes]
rs17198168	0.81[EUR][1000 genomes]
rs17198713	1.00[ASN][1000 genomes]
rs28373246	1.00[ASN][1000 genomes]
rs41555414	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41560121	1.00[ASN][1000 genomes]
rs41562012	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41562921	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56006638	1.00[ASN][1000 genomes]
rs56714080	1.00[ASN][1000 genomes]
rs56761367	1.00[ASN][1000 genomes]
rs6905036	1.00[ASN][1000 genomes]
rs6918237	1.00[ASN][1000 genomes]
rs6918887	1.00[ASN][1000 genomes]
rs6919409	1.00[ASN][1000 genomes]
rs6941926	1.00[ASN][1000 genomes]
rs73728489	0.87[EUR][1000 genomes]
rs73728776	1.00[ASN][1000 genomes]
rs73728777	1.00[ASN][1000 genomes]
rs73728778	1.00[ASN][1000 genomes]
rs73728783	1.00[ASN][1000 genomes]
rs73728785	1.00[ASN][1000 genomes]
rs73728796	1.00[ASN][1000 genomes]
rs73728799	1.00[ASN][1000 genomes]
rs73728802	1.00[ASN][1000 genomes]
rs73730008	1.00[ASN][1000 genomes]
rs73730013	1.00[ASN][1000 genomes]
rs73730014	1.00[ASN][1000 genomes]
rs73730015	1.00[ASN][1000 genomes]
rs73730053	1.00[ASN][1000 genomes]
rs73730325	0.87[EUR][1000 genomes]
rs73730350	1.00[ASN][1000 genomes]
rs7742981	1.00[ASN][1000 genomes]
rs7764623	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:77 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv601481	chr6:30422632-31284253	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1012 gene(s)	inside rSNPs	diseases
4	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
6	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
7	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
8	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
9	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
10	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
13	nsv1034391	chr6:31131121-31279595	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
14	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
15	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
16	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
17	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
18	esv32635	chr6:31141504-31250618	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
19	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
20	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
21	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
22	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
23	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
24	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
25	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
26	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
27	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
28	nsv966677	chr6:31205370-31256620	Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	esv5999	chr6:31206410-31285897	Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	esv3373199	chr6:31206451-31287335	Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
32	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
33	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
34	nsv10814	chr6:31207833-31238620	Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
35	esv6375	chr6:31210228-31287149	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
36	nsv884142	chr6:31210265-31239855	Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
37	esv3475032	chr6:31210396-31321602	Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
38	esv3475033	chr6:31210396-31321602	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
39	esv3494518	chr6:31213606-31289031	Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
40	esv3494520	chr6:31213606-31289031	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
41	esv2422229	chr6:31215949-31322934	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
42	esv1851896	chr6:31230800-31238694	Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
43	esv3328153	chr6:31230846-31327330	Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
44	esv2503823	chr6:31233039-31319362	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
45	esv35158	chr6:31233510-31318221	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
46	nsv525255	chr6:31234381-31241032	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
47	esv3475034	chr6:31234427-31327274	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
48	esv3475035	chr6:31234427-31327274	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
49	esv5788	chr6:31234471-31320006	ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
50	esv3398089	chr6:31235473-31240071	Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31233200-31238400	Weak transcription	Small Intestine	intestine
2	chr6:31235000-31238600	Weak transcription	HSMM	muscle
3	chr6:31235200-31238400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:31235600-31238400	Genic enhancers	Spleen	Spleen
5	chr6:31235600-31238400	Weak transcription	NH-A	brain
6	chr6:31235600-31238800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:31235600-31238800	Weak transcription	Fetal Kidney	kidney
8	chr6:31235800-31238400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:31235800-31238400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:31235800-31238400	Weak transcription	Brain Substantia Nigra	brain
11	chr6:31235800-31238400	Strong transcription	Thymus	Thymus
12	chr6:31235800-31238600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:31235800-31238600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:31235800-31238600	Weak transcription	Fetal Lung	lung
15	chr6:31236000-31238600	Strong transcription	Fetal Intestine Small	intestine
16	chr6:31236000-31238600	Weak transcription	HSMMtube	muscle
17	chr6:31236200-31238400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr6:31236200-31238600	Strong transcription	H9 Cell Line	embryonic stem cell
19	chr6:31236200-31238600	Weak transcription	Brain Angular Gyrus	brain
20	chr6:31236200-31238800	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
21	chr6:31236200-31238800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:31236200-31239800	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:31236400-31238400	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr6:31236400-31238400	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:31236400-31238600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr6:31236400-31239000	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
27	chr6:31236400-31239000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
28	chr6:31236400-31239000	Transcr. at gene 5' and 3'	Primary T killer naive cells fromperipheralblood	blood
29	chr6:31236400-31239200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr6:31236600-31238400	Strong transcription	HMEC	breast
31	chr6:31236600-31238600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:31236600-31239000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
33	chr6:31236600-31239000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
34	chr6:31236600-31239800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
35	chr6:31236600-31240400	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:31236800-31238400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:31236800-31238400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
38	chr6:31236800-31238600	Strong transcription	Fetal Intestine Large	intestine
39	chr6:31236800-31239000	Transcr. at gene 5' and 3'	Primary neutrophils fromperipheralblood	blood
40	chr6:31236800-31239000	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
41	chr6:31236800-31239000	Transcr. at gene 5' and 3'	Primary T killer memory cells from peripheral blood	blood
42	chr6:31236800-31239000	Transcr. at gene 5' and 3'	Duodenum Mucosa	Duodenum
43	chr6:31236800-31239800	Transcr. at gene 5' and 3'	Colonic Mucosa	Colon
44	chr6:31237000-31238400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr6:31237000-31238400	Genic enhancers	Liver	Liver
46	chr6:31237000-31238600	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:31237000-31238800	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
48	chr6:31237000-31239000	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
49	chr6:31237000-31239000	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:31237000-31239000	Transcr. at gene 5' and 3'	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links