Variant report
| Variant | rs420590 |
|---|---|
| Chromosome Location | chr21:17328533-17328534 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:17326901..17328732-chr21:17328956..17331734,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1735700 | 0.86[ASN][1000 genomes] |
| rs2205454 | 0.82[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2823522 | 0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2823524 | 0.91[ASN][1000 genomes] |
| rs366592 | 0.86[ASN][1000 genomes] |
| rs373182 | 0.95[ASN][1000 genomes] |
| rs380087 | 0.86[ASN][1000 genomes] |
| rs413785 | 0.98[ASN][1000 genomes] |
| rs416719 | 0.93[ASN][1000 genomes] |
| rs419509 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs425252 | 0.94[ASN][1000 genomes] |
| rs433085 | 0.86[ASN][1000 genomes] |
| rs435947 | 0.94[ASN][1000 genomes] |
| rs443745 | 0.93[ASN][1000 genomes] |
| rs444390 | 0.91[ASN][1000 genomes] |
| rs446216 | 0.86[ASN][1000 genomes] |
| rs68109293 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7348985 | 0.95[ASN][1000 genomes] |
| rs9978096 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9984156 | 0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834050 | chr21:17146090-17348951 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv964543 | chr21:17296262-17338385 | Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv3463 | chr21:17327119-17343458 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr21:17327000-17339800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
