Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1735700	0.90[ASN][1000 genomes]
rs2205454	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2823522	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823524	0.91[ASN][1000 genomes]
rs366592	0.90[ASN][1000 genomes]
rs373182	0.92[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs380087	0.90[ASN][1000 genomes]
rs413785	0.97[ASN][1000 genomes]
rs416719	0.89[ASN][1000 genomes]
rs419509	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs420590	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs425252	0.90[ASN][1000 genomes]
rs433085	0.87[ASN][1000 genomes]
rs435947	0.90[ASN][1000 genomes]
rs443745	0.93[ASN][1000 genomes]
rs444390	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs446216	0.87[ASN][1000 genomes]
rs68109293	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7348985	0.94[ASN][1000 genomes]
rs9978096	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv964543	chr21:17296262-17338385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17326200-17327000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
2	chr21:17326600-17327000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr21:17326600-17327000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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