Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1735700	0.88[ASN][1000 genomes]
rs2205454	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2823522	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2823524	0.90[ASN][1000 genomes]
rs366592	0.89[ASN][1000 genomes]
rs373182	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs380087	0.89[ASN][1000 genomes]
rs413785	0.95[ASN][1000 genomes]
rs416719	0.87[ASN][1000 genomes]
rs419509	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs420590	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs425252	0.88[ASN][1000 genomes]
rs433085	0.85[ASN][1000 genomes]
rs435947	0.88[ASN][1000 genomes]
rs443745	0.92[ASN][1000 genomes]
rs444390	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs446216	0.85[ASN][1000 genomes]
rs68109293	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7348985	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9984156	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834050	chr21:17146090-17348951	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv964543	chr21:17296262-17338385	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:17315400-17316200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr21:17315400-17316200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr21:17315800-17316200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr21:17316000-17316200	Enhancers	A549	lung
5	chr21:17316000-17318600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr21:17316000-17319200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: