Variant report

Variant	rs4241597
Chromosome Location	chr4:77902125-77902126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77897592..77900729-chr4:77901374..77904309,4	MCF-7	breast:
2	chr4:77889376..77894977-chr4:77900561..77905998,5	MCF-7	breast:
3	chr4:77875173..77877456-chr4:77900454..77902686,2	K562	blood:
4	chr4:77894869..77896683-chr4:77901568..77903976,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10518162	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs12509258	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17002297	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2132764	0.88[CEU][hapmap];0.82[CHD][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes]
rs2242368	0.82[EUR][1000 genomes]
rs4859730	0.88[CEU][hapmap];0.82[CHD][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs58596754	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6826681	0.85[CEU][hapmap]

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77876800-77906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:77879600-77904200	Weak transcription	Gastric	stomach
3	chr4:77882200-77905200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:77884800-77904200	Weak transcription	Pancreas	Pancrea
5	chr4:77891200-77905600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:77891600-77907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:77891800-77905200	Weak transcription	Brain Substantia Nigra	brain
8	chr4:77893000-77906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:77893200-77918800	Weak transcription	A549	lung
10	chr4:77893600-77902400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr4:77894600-77903000	Weak transcription	Esophagus	oesophagus
12	chr4:77894800-77904200	Weak transcription	Fetal Intestine Small	intestine
13	chr4:77895200-77905600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:77896200-77905000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:77896400-77903400	Weak transcription	Fetal Muscle Trunk	muscle
16	chr4:77897800-77905400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr4:77898400-77903600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr4:77899000-77908400	Enhancers	Adipose Nuclei	Adipose
19	chr4:77899200-77903000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr4:77899200-77907600	Enhancers	Placenta	Placenta
21	chr4:77899600-77902200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:77899600-77902800	Weak transcription	K562	blood
23	chr4:77899600-77903600	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:77899600-77904200	Weak transcription	Brain Anterior Caudate	brain
25	chr4:77899600-77904200	Enhancers	Osteobl	bone
26	chr4:77899600-77904400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:77899600-77905600	Genic enhancers	HSMM	muscle
28	chr4:77899600-77917000	Weak transcription	Colonic Mucosa	Colon
29	chr4:77899800-77902400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:77899800-77902600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:77899800-77903000	Weak transcription	Fetal Thymus	thymus
32	chr4:77899800-77903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr4:77899800-77903200	Weak transcription	Stomach Mucosa	stomach
34	chr4:77899800-77903400	Weak transcription	Left Ventricle	heart
35	chr4:77899800-77904200	Weak transcription	Spleen	Spleen
36	chr4:77899800-77905800	Weak transcription	Aorta	Aorta
37	chr4:77899800-77906000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:77899800-77915200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr4:77900000-77902600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:77900200-77902200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr4:77900200-77902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr4:77900200-77902400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr4:77900200-77903000	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr4:77900200-77903200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr4:77900200-77903200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr4:77900200-77903400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr4:77900200-77905600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr4:77900200-77905600	Weak transcription	NHEK	skin
49	chr4:77900200-77906000	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr4:77900400-77902400	Weak transcription	Primary T cells from cord blood	blood

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