Variant report

Variant	rs4859730
Chromosome Location	chr4:77934432-77934433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77932387..77934435-chr4:77956473..77959096,2	K562	blood:
2	chr4:77933596..77935190-chr4:77938820..77940381,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10518162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12509258	0.81[EUR][1000 genomes]
rs17002297	0.88[CEU][hapmap];0.85[CHD][hapmap];0.84[MEX][hapmap];0.81[EUR][1000 genomes]
rs2132764	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35013553	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4150063	1.00[LWK][hapmap]
rs4241597	0.88[CEU][hapmap];0.82[CHD][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs58596754	0.81[EUR][1000 genomes]
rs6826681	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs987995	1.00[LWK][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4859730	FRAS1	cis	parietal	SCAN

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77903600-77936000	Weak transcription	Esophagus	oesophagus
2	chr4:77915600-77936800	Weak transcription	Brain Substantia Nigra	brain
3	chr4:77918400-77937400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr4:77920200-77940200	Weak transcription	Spleen	Spleen
5	chr4:77920400-77936000	Weak transcription	Gastric	stomach
6	chr4:77920400-77936200	Weak transcription	Colonic Mucosa	Colon
7	chr4:77924600-77936000	Weak transcription	Rectal Smooth Muscle	rectum
8	chr4:77924600-77937000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:77924600-77940000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:77924800-77941000	Weak transcription	Colon Smooth Muscle	Colon
11	chr4:77925000-77940200	Weak transcription	Fetal Brain Male	brain
12	chr4:77927200-77937600	Genic enhancers	NHDF-Ad	bronchial
13	chr4:77928200-77960800	Strong transcription	Fetal Intestine Large	intestine
14	chr4:77928400-77936000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr4:77928400-77936200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:77928600-77936000	Weak transcription	Brain Angular Gyrus	brain
17	chr4:77928600-77936400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:77928600-77940200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:77928600-77940200	Weak transcription	Right Ventricle	heart
20	chr4:77928600-77947600	Weak transcription	Psoas Muscle	Psoas
21	chr4:77928800-77935600	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr4:77928800-77936000	Weak transcription	Pancreas	Pancrea
23	chr4:77928800-77936000	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr4:77928800-77939200	Weak transcription	Fetal Intestine Small	intestine
25	chr4:77928800-77942400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr4:77929200-77936000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr4:77929200-77936000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr4:77929200-77940000	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:77929200-77943000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:77929400-77937600	Strong transcription	GM12878-XiMat	blood
31	chr4:77929400-77940200	Weak transcription	Primary B cells from cord blood	blood
32	chr4:77929400-77941600	Weak transcription	Thymus	Thymus
33	chr4:77929400-77944800	Weak transcription	Primary B cells from peripheral blood	blood
34	chr4:77929400-77961800	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr4:77929600-77936200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr4:77929600-77937600	Strong transcription	Fetal Muscle Leg	muscle
37	chr4:77929600-77942400	Strong transcription	Placenta	Placenta
38	chr4:77929800-77935200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr4:77929800-77936200	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr4:77929800-77936200	Weak transcription	Liver	Liver
41	chr4:77929800-77937200	Enhancers	Primary T cells from cord blood	blood
42	chr4:77929800-77937200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
43	chr4:77929800-77940200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr4:77930200-77934600	Weak transcription	K562	blood
45	chr4:77930200-77935200	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:77930400-77938800	Strong transcription	Fetal Kidney	kidney
47	chr4:77931200-77934800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:77931400-77949400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr4:77931400-77952000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr4:77932200-77935000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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