Variant report

Variant	rs6826681
Chromosome Location	chr4:77927538-77927539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:77927429-77927595	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77919457..77921584-chr4:77925494..77928132,2	K562	blood:
2	chr4:77927278..77929882-chr4:77994824..77997804,2	MCF-7	breast:

Variant related genes	Relation type
SEPT11	TF binding region
ENSG00000118816	Chromatin interaction

rs_ID	r²[population]
rs10518162	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10518163	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs17002297	0.85[CEU][hapmap]
rs2132764	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs35013553	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4241597	0.85[CEU][hapmap]
rs4859730	1.00[CEU][hapmap];0.98[EUR][1000 genomes]

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77903600-77936000	Weak transcription	Esophagus	oesophagus
2	chr4:77915600-77936800	Weak transcription	Brain Substantia Nigra	brain
3	chr4:77916000-77928000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr4:77916200-77928200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:77917400-77928000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr4:77917400-77928000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr4:77917400-77928000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr4:77917400-77928400	Strong transcription	Fetal Muscle Trunk	muscle
9	chr4:77918400-77937400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:77919800-77928000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:77919800-77928600	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:77920000-77928200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:77920000-77932200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:77920200-77928200	Weak transcription	Fetal Thymus	thymus
15	chr4:77920200-77928200	Weak transcription	Lung	lung
16	chr4:77920200-77928200	Weak transcription	Pancreas	Pancrea
17	chr4:77920200-77928400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr4:77920200-77940200	Weak transcription	Spleen	Spleen
19	chr4:77920400-77927800	Weak transcription	Ovary	ovary
20	chr4:77920400-77928000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:77920400-77928000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:77920400-77928200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:77920400-77928400	Weak transcription	Fetal Intestine Small	intestine
24	chr4:77920400-77936000	Weak transcription	Gastric	stomach
25	chr4:77920400-77936200	Weak transcription	Colonic Mucosa	Colon
26	chr4:77921000-77928200	Weak transcription	Primary B cells from cord blood	blood
27	chr4:77921800-77931200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:77923400-77932200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr4:77923600-77927600	Weak transcription	Hela-S3	cervix
30	chr4:77923600-77928000	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr4:77923800-77928000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr4:77923800-77928000	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr4:77924000-77927600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:77924000-77928000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr4:77924000-77928200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr4:77924200-77928000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:77924200-77928000	Weak transcription	Brain Angular Gyrus	brain
38	chr4:77924200-77928200	Strong transcription	Placenta	Placenta
39	chr4:77924400-77927600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr4:77924400-77927600	Weak transcription	Brain Anterior Caudate	brain
41	chr4:77924400-77927800	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr4:77924400-77928000	Strong transcription	Fetal Brain Female	brain
43	chr4:77924400-77928200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:77924400-77928200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:77924400-77928200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr4:77924400-77928200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr4:77924400-77928200	Weak transcription	Right Ventricle	heart
48	chr4:77924400-77928200	Weak transcription	Small Intestine	intestine
49	chr4:77924400-77928400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr4:77924400-77928400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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