Variant report

Variant	rs4243654
Chromosome Location	chr14:77685535-77685536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11159252	0.88[EUR][1000 genomes]
rs11627977	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1319322	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1876529	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2110909	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2287377	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2542824	0.91[AFR][1000 genomes]
rs396750	0.82[YRI][hapmap]
rs421146	0.84[ASW][hapmap];0.97[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes]
rs4899644	0.83[JPT][hapmap]
rs4903561	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs978607	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv832834	chr14:77554987-77724357	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77654200-77709400	Weak transcription	Esophagus	oesophagus
2	chr14:77671000-77686200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:77674800-77686400	Weak transcription	Brain Substantia Nigra	brain
4	chr14:77679400-77686200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr14:77679600-77686000	Weak transcription	Brain Anterior Caudate	brain
6	chr14:77680000-77686000	Weak transcription	Spleen	Spleen
7	chr14:77680000-77686600	Weak transcription	Brain Angular Gyrus	brain
8	chr14:77680200-77685600	Weak transcription	Fetal Brain Female	brain
9	chr14:77680200-77688000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:77682400-77686200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr14:77683200-77686400	Weak transcription	Fetal Brain Male	brain
12	chr14:77685000-77687400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr14:77685000-77692800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:77685200-77685600	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:77685200-77690800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr14:77685400-77686600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr14:77685400-77687000	Strong transcription	Pancreatic Islets	Pancreatic Islet
18	chr14:77685400-77692600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links